Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 255 a.a., flagellar motor protein PomA (RefSeq) from Shewanella sp. ANA-3

 Score =  113 bits (282), Expect = 4e-30
 Identities = 67/244 (27%), Positives = 128/244 (52%), Gaps = 13/244 (5%)

Query: 4   IGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMK-RFKW 62
           IG++    FIL   +  GG  +  +D+P+  IV GG+    + +F     + ++K   K 
Sbjct: 7   IGLVGGFGFILWAMMTSGGL-AIFIDVPSVFIVFGGSFFVVMMKFNLKQFLGAVKIAVKA 65

Query: 63  LIFPLRTDLNERAEFLIE----IAGDVRKGGLLSIEDKIDQIDDPFLHKGLELLVDGYEK 118
            +F +     ++ E LIE    +A   RKGG L++E+   QI + F+ K +++LVDG++ 
Sbjct: 66  FMFKI-----DKPEDLIEQSVTMADAARKGGFLALEEA--QISNSFMQKAVDMLVDGHDG 118

Query: 119 DNIVEILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLLDAPDKLGGA 178
           + +   LEK+I   +      + ++ A G   P MG++G + GL+  +  +  P  +G +
Sbjct: 119 EVVRAALEKDIALTEERHRNGIAIFRAFGDVGPAMGMIGTLVGLVAMLSNMSDPKSIGPS 178

Query: 179 IAVAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMTLTGITGIADGESPQRLQAQL 238
           +AVA + T+YG   AN++ +P  ++      +  L + + +  +  I DG++P+ ++  L
Sbjct: 179 MAVALLTTLYGAVVANMVCIPIADKLTLRMGEEMLNRNLIMDAVLAIQDGQNPRVIEGFL 238

Query: 239 NPYL 242
             YL
Sbjct: 239 KNYL 242