Pairwise Alignments

Query, 294 a.a., rarD protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 302 a.a., RarD protein, chloamphenicol sensitive from Xanthomonas campestris pv. campestris strain 8004

 Score =  234 bits (597), Expect = 2e-66
 Identities = 125/290 (43%), Positives = 183/290 (63%), Gaps = 3/290 (1%)

Query: 5   EYRKGILLAVSAYCMWGFAPLYFKLLHHVSATEILLHRVIWSFVFMVIIMMFIGGFGKLR 64
           E R+G+L+  S + +WG  PLY+ +L  V + +I+ HR++WS + +V  ++   G    R
Sbjct: 8   EARRGLLITASTFVLWGVIPLYWHVLKAVPSLQIIGHRIVWSALLVVAWLVATSGLRWWR 67

Query: 65  QLFKQPKQLIVLTITSLLIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLFLGER 124
            +  QP+ L +L  +S+ IA NW L+IWA+N  H++++SLGYFINPLL+VLLG++ L ER
Sbjct: 68  TIAAQPRALAMLAGSSVAIAFNWGLYIWAINAGHVIESSLGYFINPLLSVLLGVVVLKER 127

Query: 125 LRKLQWFAVALASAGVLIQLISFGSIPIVSLALAGTFGLYALLRKKVNVDAKSGLLVETA 184
           LR+LQW AVA A+ GVL   +  G+ P ++L LA +FGLY LLRK V VD  +GL VE+ 
Sbjct: 128 LRRLQWVAVACAALGVLWLTLDAGAPPWIALGLASSFGLYGLLRKLVAVDPVAGLGVESV 187

Query: 185 ILLPVALVYLVATLDSATANMLTNDWHL--NLLLMAAGIVTTIPLLCFAGAAVRIPLSML 242
            L   AL+ LV   +          W L  + +L+  G+VT +PL+ FA    RIPLS++
Sbjct: 188 YLFVPALL-LVGWGEYGHGGGFIGSWSLGTDAMLIFGGVVTALPLIGFAYGVRRIPLSLV 246

Query: 243 GFFQYIGPSIMFILAVTLFNEPFDAEKSITFGFIWSALLVFTFDMAYKRK 292
           G  QYI PS+  +L V  F+EPFD  ++I F  IW  LL+F  D  ++ +
Sbjct: 247 GILQYIAPSLQLLLGVWFFHEPFDPGRAIGFAAIWLGLLLFVGDSVWRAR 296