Pairwise Alignments

Query, 294 a.a., rarD protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., EamA family transporter RarD from Pseudomonas aeruginosa PA14

 Score =  149 bits (375), Expect = 1e-40
 Identities = 94/285 (32%), Positives = 153/285 (53%), Gaps = 6/285 (2%)

Query: 8   KGILLAVSAYCMWGFAPLYFKLLHHVSATEILLHRVIWSFVFMVIIMMFIGGFGKLR--- 64
           +G+LL+++A  ++   P Y  LL  + + +++ HRV+WS   + ++++    +  LR   
Sbjct: 6   QGVLLSLAASVLFVTLPGYVHLLEPLDSLQVVAHRVVWSIPMVFLLVVATRQWPTLRAAW 65

Query: 65  -QLFKQPKQLIVLTITSLLIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLFLGE 123
            +LF +P  L    +T+ ++   W +FIWA      L+ SLGYF+ PL  VL+G +F GE
Sbjct: 66  RRLFAEPWLLACFPLTAAMMLLQWGIFIWAPLAGKTLELSLGYFLLPLAMVLVGRVFYGE 125

Query: 124 RLRKLQWFAVALASAGVLIQLISFGSIPIVSLALAGTFGLYALLRKKVNVDAKSGLLVET 183
           RL  LQ  AVA A AGVL +     +   VSL  A  +  Y +LR+++ VDA SG + E 
Sbjct: 126 RLTSLQAIAVACALAGVLHEFWLTRAFSWVSLVTALGYPPYFMLRRRMGVDALSGFVFEM 185

Query: 184 AILLPVALVYLVATLDSATANMLTNDWHLNLLLMAAGIVTTIPLLCFAGAAVRIPLSMLG 243
             LLP+AL  L    D + A        L LLL   G+++ +       ++  +P+ + G
Sbjct: 186 LFLLPLALAALYWLGDESQA--FREAPRLWLLLPMLGLISALAFGAMMASSRLLPMGLFG 243

Query: 244 FFQYIGPSIMFILAVTLFNEPFDAEKSITFGFIWSALLVFTFDMA 288
              Y+ P ++F++AV    E F  E+  T+  IW A+L+  +D A
Sbjct: 244 ILSYVEPVLLFLVAVLFLGEAFRPEQLWTYAPIWLAVLLTGWDSA 288