Pairwise Alignments

Query, 294 a.a., rarD protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 298 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score =  217 bits (553), Expect = 2e-61
 Identities = 116/276 (42%), Positives = 175/276 (63%), Gaps = 2/276 (0%)

Query: 10  ILLAVSAYCMWGFAPLYFKLLHHVSATEILLHRVIWSFVFMVIIMMFIGGFGKLRQLFKQ 69
           +L AV+A  +WG  PLYFKLL  + + +I++HR+ WS VF+V ++ +   +  + ++ K+
Sbjct: 1   MLYAVAASILWGLFPLYFKLLKEIPSFDIVVHRLFWSCVFLVAVLTWRRQWRWVGEVVKR 60

Query: 70  PKQLIVLTITSLLIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLFLGERLRKLQ 129
           P  +    +++LL+ GNW L++WAVN   ++D SLGYF++PL++V +G L L ER+R LQ
Sbjct: 61  PMVVGGFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPLQ 120

Query: 130 WFAVALASAGVLIQLISFGSIPIVSLALAGTFGLYALLRKKVNVDAKSGLLVETAILLPV 189
           W AV LA   V+   I+ GS+P VSL +A +F  Y LLRK  ++ A  GL +ET ++LP+
Sbjct: 121 WLAVFLALGAVIWLTIANGSLPWVSLLIALSFAFYGLLRKTAHLGALEGLSLETLLMLPL 180

Query: 190 ALVYL-VATLDSATANMLTNDWHLNLLLMAAGIVTTIPLLCFAGAAVRIPLSMLGFFQYI 248
            L+ L V TL  + A          +LL  +G +T +PLL FA  A RIPLSMLG  QYI
Sbjct: 181 VLLVLGVDTLRDSNA-FTHASTSARILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYI 239

Query: 249 GPSIMFILAVTLFNEPFDAEKSITFGFIWSALLVFT 284
            P+I  +  V ++ E F   ++I F  IW+AL V++
Sbjct: 240 SPTIQLLGGVLIYGEAFTGARAIGFCVIWAALAVYS 275