Pairwise Alignments

Query, 404 a.a., ISSod3, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 404 a.a., Mobile element protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  212 bits (539), Expect = 2e-59
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 9/379 (2%)

Query: 1   MQVLTILHQSLYQHCPEIHQKRLNTLMVACKALINADCLTLTHLGRHIDGTSTHTKHSIK 60
           M+   +L + L      +H  R   L+ A +AL++   LTL  + R    ++   +  +K
Sbjct: 1   MRASEVLQKCLPNSLSGMHALRERALLHAVEALLHGRRLTLMDIARSWP-SALRVRAPLK 59

Query: 61  RMDRLLGNPHLHHERLAVYQWHAKWLLTAHTMPTILVDWSDMREGRELIALRASIAIKGR 120
            +DRLL N +L  ER  +    A WLL     P I++DWSD++  +    LRA++ + GR
Sbjct: 60  AVDRLLSNRNLQVERSVIDHEMAHWLLRG-AQPVIVIDWSDLKPDKSWCLLRAAVPVGGR 118

Query: 121 SITLYERTFPLVLQGTQTAHNQFLNELHKVLPDNITPLIVTDAGFRNPWFRKVEQLGWYW 180
           ++TL +   P   QG+  A  +FL +L  ++PD++ P++VTDAGFR PWFR V  +GW W
Sbjct: 119 TLTLLDMVVPGKQQGSPGAERRFLQQLRALVPDDVRPILVTDAGFRTPWFRAVSAMGWCW 178

Query: 181 LGRVRGLSVYRLHPF----GRQFSLKALYPKASRRAKHVGRVALSVKKPLLCEMVLFRAP 236
           +GR+RG +  +         +    + L+  AS RA  +  +  +   PL C +V++   
Sbjct: 179 VGRLRGRTQVKPQDVRDEADQWIDSRKLHVLASNRACELPPMQANRSDPLDCRLVIYAKA 238

Query: 237 SKGRK--GQRSTTTDCHHTAQWTYELTAKEPWALVTNLTIEAMSPQKLVNIYQKRMQIEE 294
            +GRK   +RS       ++        +EPW +V +  ++A S ++LVN+Y +RMQIE 
Sbjct: 239 RQGRKQCNRRSPAKVSRASSSLKAAAREREPWLIVASPQLQAPSAKQLVNVYARRMQIEL 298

Query: 295 TFRDLKSPAYGFGLRHSRTRYAARMDILLLIALLVQLAFWWVGLYGETQQLQRHFQANTV 354
            FRDLKS  YG  L  S TR   R+ ILLLI  L   A W  GL  E   + +       
Sbjct: 299 AFRDLKSHRYGQALEDSLTRRGERLQILLLINTLAAFASWLAGLGCEATGIAQWLSPRN- 357

Query: 355 KKRNVLSTIRMGKELLRRR 373
             R + ST+R+G+E L R+
Sbjct: 358 STRKLYSTLRIGREALVRQ 376