Pairwise Alignments

Query, 194 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 592 a.a., response regulator receiver protein (RefSeq) from Shewanella sp. ANA-3

 Score =  328 bits (841), Expect = 1e-94
 Identities = 161/187 (86%), Positives = 171/187 (91%)

Query: 1   MDFRALALSLLLWLVPLWACANDQLDKLTQQVYQYPTKALAQITELEKQQQTDNTSNIDK 60
           MDFR LALSL LWL P    ANDQLD L + +YQYPTKAL QI+ LEKQQ  DN+S+ID+
Sbjct: 1   MDFRVLALSLWLWLFPFGVSANDQLDALAELIYQYPTKALTQISTLEKQQTADNSSDIDR 60

Query: 61  LRLSILKCQNLLQLGENEAAINLAQMGEAHAKQLKLDQARPYFFNCQADAYLNYDNIQDA 120
           LRLS+LKCQNLLQLGENEAAINLAQMGEA AKQLKLDQARPYF NCQADAYLNYDN+QDA
Sbjct: 61  LRLSMLKCQNLLQLGENEAAINLAQMGEASAKQLKLDQARPYFLNCQADAYLNYDNVQDA 120

Query: 121 LPLLDSAITLARRYQQPQALIDALRLRGQLDTNTDNFSSAIEDLRIAIDIYPDIHTQTQN 180
           LPLLDSAITLARRYQQPQALIDALRLRGQLDTNTDNFSSAIEDLRIAIDIYPDIHTQTQN
Sbjct: 121 LPLLDSAITLARRYQQPQALIDALRLRGQLDTNTDNFSSAIEDLRIAIDIYPDIHTQTQN 180

Query: 181 WIWPPEA 187
           W+WPP+A
Sbjct: 181 WVWPPQA 187



 Score = 24.3 bits (51), Expect = 0.005
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 18/106 (16%)

Query: 54  NTSNIDKLRLSILKCQNLLQL-----GENEAAINLAQMGEAHAKQLKLDQARPYFFNCQA 108
           NT  +   R ++++   LL         +EAA+ L        + LK      +F+   +
Sbjct: 293 NTFKLQNQRAAMMRSTRLLAQIRFAQHRDEAALALMNSAIEQGESLKQYSDLKWFYGILS 352

Query: 109 DAYLNYDNIQDALPLLDSAITLARRYQQPQALIDALRLRGQLDTNT 154
           D Y  +DN + A             Y+  Q   DA  L  +   NT
Sbjct: 353 DYYQTHDNYKLA-------------YEYLQKRFDATELANESMNNT 385