Pairwise Alignments

Query, 549 a.a., toxin secretion ABC transporter protein, HlyB family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 579 a.a., type I secretion system ATPase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  136 bits (342), Expect = 3e-36
 Identities = 122/509 (23%), Positives = 216/509 (42%), Gaps = 26/509 (5%)

Query: 14  FTELLLSSTLINVLSLALPFTMLQIYDRILPNEAYGTASVLAIGVGIAILLELVLRYTRS 73
           F  + + S  +N L L  P  MLQ+YDR+L +++  T   L++ V    L+  +L + R 
Sbjct: 27  FAWVFVFSIFVNALMLTGPLYMLQVYDRVLGSQSEETLLALSVLVAFLFLMMGILDWARG 86

Query: 74  WLLALNASNYELQTTAQFVDRLMKADYHHVEQLGSGKILHGITSIATMREIYSGQAAVAL 133
            +LA   +   +Q T     R+  A      + G      G+  + +M+ + S  A +A+
Sbjct: 87  RVLA--RAGARMQDTLD--QRVFSASLRKSLRQGQTTASTGLRDLESMQRLLSSPALLAV 142

Query: 134 MDFPFVIIFLALV----------AYIGGPLVFIPILVWGIAGIGVWQIGKKLSVATRELA 183
            D P+  +F+A +          A +GG  + +      +  +  W   + +S A    A
Sbjct: 143 FDIPWTPLFVAAIFMFHPWLGYLALVGGTFLIL------VTVLNQWLTSRPVSKANEASA 196

Query: 184 ISDDERTRLLILVLSGLTTAKSLALESRITYAYKKINYQRLAQQNEVDWLSSQLQEWIQG 243
            ++    +L      G  T +SL +       + K+  + L++       +       + 
Sbjct: 197 RAEMMSQQL----AGGAETVESLGMRGAAFTRWSKVRAESLSETLTSSDRTGGFSTLTKT 252

Query: 244 ASQATTLALVLIGCFEVLNGDLTTGGLAACSILAGRAVAPLSAIGSLKAKFVTAQSAMQD 303
                  A++ +G + VL G LT G + A SIL GRA+AP+            A    +D
Sbjct: 253 FRLFLQSAMLGLGAYLVLQGQLTAGAMIAGSILMGRALAPIEMAIGQWPLVQRAMKGRRD 312

Query: 304 VNEIIASPPESLNGTQVYQQKLPSGPIQFEQVSAQQTGAKLKQINLTIPAGSLVTVTSNP 363
           + E++ + P     T + + K      Q   V   +  A L+ ++ T+  G    V    
Sbjct: 313 LIELLDAIPPDPERTPLPKPKARLVVEQLIVVPPGEAQAALRSVSFTVSPGEACGVIGQS 372

Query: 364 LTHASLLLSTVGGYHQVTEGAIKIDSIPLTEHDPLEYRQSISYVSPWATLLAGSILDNLT 423
               S L   + G   V  G I++D   L +  P      I Y+     L  G+I +N+ 
Sbjct: 373 GAGKSTLARALTGIWPVAGGKIRLDGAALDQFGPDVLGTHIGYLPQQVVLFDGTIAENIA 432

Query: 424 LFRHEREAYAMV-LADKLGLSATIAQLPAGYQTLVGNNDSQMLNKGAIKLIAIVRALAQS 482
               + +A A+V  A +      I +LP GY T++  + ++ L+ G ++ I + RAL   
Sbjct: 433 RLAPQPDAQAVVDAAKRADAHEMILKLPKGYDTMLLGSQTR-LSGGQMQRIGLARALYGD 491

Query: 483 PSILLLDEPMVSLDADSQQRLLALLLELK 511
           P +L+LDEP  +LD    Q L A +  +K
Sbjct: 492 PVLLVLDEPNSNLDNSGSQALNAAVARMK 520