Pairwise Alignments

Query, 205 a.a., MSHA pilin protein MshB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 174 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

 Score = 69.3 bits (168), Expect = 4e-17
 Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 7/119 (5%)

Query: 3   TKQNGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRSQWE 62
           +K  GF+LIEL+I IVILG++A  A PRF+N++ DA+  ++  VA G+ +A++ + SQ  
Sbjct: 2   SKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGMESALTLLHSQAL 61

Query: 63  VDGRQ--NSSVILDGTSVSLDPRFGYPTGTSGTDATAMTDASCQQVFNTVLQSAPRNVL 119
           ++G+      + ++G    L    GYP+  +G D+    +A  Q  FN  + S  +NV+
Sbjct: 62  IEGQDIGKGEITINGVKTPL--LNGYPS-VNGKDSFEEINAQVQAWFN--IDSVGKNVI 115