Pairwise Alignments

Query, 349 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 319 a.a., Protein of unknown function DUF6 from Pseudomonas syringae pv. syringae B728a

 Score =  163 bits (412), Expect = 6e-45
 Identities = 103/310 (33%), Positives = 157/310 (50%), Gaps = 6/310 (1%)

Query: 42  GLLFISVAVLFWGMLPIALKLSGSFIDPVTLTWFRFLVALIVSILVQWSAGSLKQFAALD 101
           GL    +  L WG+LPI LK     +DPVT+TWFR  V+  +  +   S G L  F  L 
Sbjct: 11  GLCLSLLTALLWGILPIKLKQVLQVMDPVTVTWFRLAVSGALLFIWLASVGRLPSFKMLG 70

Query: 102 AKVWLRLILAGLFLMLNYVSFVYSLDYLAPGAAQLNFQTSPFFLAFGGVLFFKERLNAIQ 161
            K  + + LA   L+ NYV ++  L  L+PG  QL  Q  P FL    +  FKER +  Q
Sbjct: 71  RKGRVLVGLAVFGLVGNYVLYLIGLRLLSPGTTQLLVQVGPIFLLISSIFLFKERFSLGQ 130

Query: 162 LSCFASLALGMLMFFHPFLDFSATDNHEIWLGVMIVQFSALSWTTYALLQKSLLNRLSPA 221
                 L +G   FF+  L    T   +  LGV++V  ++  WT Y L QK LL   +  
Sbjct: 131 GIGLMVLLVGFGFFFNQRLVELFTSLGDYTLGVLVVLLASTIWTFYGLSQKQLLTVWNSL 190

Query: 222 NVLLVIYALGIFAMAPFSDFSQFAQMNSFDWQVALFCAANTLIAYGCFGQSMKYWPTAQV 281
            V++VIY      + P++  ++   ++     + L C  NTL+AYG F +++ +W  ++V
Sbjct: 191 QVMMVIYLFCALLLTPWAHPAEALLLSPLQGWLLLACCLNTLVAYGAFAEALAHWEASRV 250

Query: 282 SAMLALTPVFSFSATALVVSIGWWPEVFRADELDALSLFGIGVIIVSVMVVQLLPL---- 337
           SA LALTP+ + +A AL   +  WP+  +A+EL+ +   G  +++    +  L P     
Sbjct: 251 SATLALTPLVTLTAVALAAWL--WPDYVQAEELNVMGYGGALLVVAGSALTALGPSLVAG 308

Query: 338 YRQRRARRLQ 347
            R R+AR  Q
Sbjct: 309 LRARKARLAQ 318