Pairwise Alignments

Query, 349 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 316 a.a., integral membrane domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  405 bits (1041), Expect = e-118
 Identities = 196/297 (65%), Positives = 240/297 (80%), Gaps = 1/297 (0%)

Query: 42  GLLFISVAVLFWGMLPIALKLSGSFIDPVTLTWFRFLVALIVSILVQWSAGSLKQFAALD 101
           G +++++AV FWGMLPIALKLSG FIDPVTLTWFRFLVALIVS+ VQW  G L+QFAAL 
Sbjct: 9   GFIYVAIAVFFWGMLPIALKLSGDFIDPVTLTWFRFLVALIVSVAVQWFGGRLRQFAALA 68

Query: 102 AKVWLRLILAGLFLMLNYVSFVYSLDYLAPGAAQLNFQTSPFFLAFGGVLFFKERLNAIQ 161
            + WL L+ A + LM NYVSFVYSLDYLAPG AQL+FQT+PFFLAFGGV+FF ERL A+Q
Sbjct: 69  KQDWLLLLGAAMLLMANYVSFVYSLDYLAPGVAQLSFQTAPFFLAFGGVIFFAERLKAVQ 128

Query: 162 LSCFASLALGMLMFFHPFLDFSATDNHEIWLGVMIVQFSALSWTTYALLQKSLLNRLSPA 221
           L CFA LA+GM +FF P L F   D  ++ LG+ IVQFSAL+WT+YAL+QK+L+ ++SPA
Sbjct: 129 LGCFALLAVGMYLFFAPRLSFEG-DTGDLLLGLAIVQFSALAWTSYALIQKALIPKISPA 187

Query: 222 NVLLVIYALGIFAMAPFSDFSQFAQMNSFDWQVALFCAANTLIAYGCFGQSMKYWPTAQV 281
           NVLL IY +G+  MAPF DF+ F  MN+  W VA FCA NTL+AYGCFGQSMKYWPTAQV
Sbjct: 188 NVLLFIYGVGVVMMAPFCDFTAFDAMNTNAWLVAGFCAINTLVAYGCFGQSMKYWPTAQV 247

Query: 282 SAMLALTPVFSFSATALVVSIGWWPEVFRADELDALSLFGIGVIIVSVMVVQLLPLY 338
           SAMLALTP+ SFS TA VV+ GWWP+ F++D L ++S+ GI +I+++V  +QLLP Y
Sbjct: 248 SAMLALTPIVSFSLTAAVVAFGWWPQSFQSDALSSVSMTGIVLIVLAVAALQLLPRY 304