Pairwise Alignments

Query, 349 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 301 a.a., DMT family transporter from Rhodopseudomonas palustris CGA009

 Score = 63.5 bits (153), Expect = 7e-15
 Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 18/293 (6%)

Query: 44  LFISVAVLFWGMLPIALKLSGSFIDPVTLTWFRFLVALIVSILVQWSAGSLKQFAALDAK 103
           L +S+  LFW    +  +     + PVTL+  R++ A+++ +   W       +  L A+
Sbjct: 18  LLLSLTSLFWAGNIVLGRAVAGHVPPVTLSCARWVGAMLLLLPFAWPH-LRHDWRKLRAQ 76

Query: 104 VWLRLILAGLFLMLNYVSFVYSLDYLAPGAAQLNFQTSPFFLAFGGVLFFKERLNAIQLS 163
             L ++L+     +N     + L Y     A L   + P F+A   +L F  RL  +Q +
Sbjct: 77  WKLMIVLSATGFAINNALSYWGLQYTQALNALLMQSSGPLFVALWSLLLFGVRLTWMQAT 136

Query: 164 CFASLALGMLMFFHPFLDFSATDNHEIWLGVMIVQFSALSWTTYALLQKSLLNRLSPANV 223
             A   LG+L       DF+A    E+  G ++V  +  ++  Y+ L         P ++
Sbjct: 137 GIALSLLGVLTIILRG-DFAALAGIELNRGDLMVAGALCAFGLYSALMPK-RPATHPLSL 194

Query: 224 LLVIYALGIFAMAPFSDFSQFAQMN-SFDW----QVALFCAANTLIAYGCFGQSMKYWPT 278
           ++V    G   + PFS +   + +  S DW     +A      +++AY CF + +     
Sbjct: 195 IVVTTGCGALLLLPFSAWEYASGVRPSADWISVATLAYVVIFPSMLAYLCFNRGVALIGP 254

Query: 279 AQVSAMLALTPVFSFSATALVVSIGWWPEVFRADELDALSLFGIGVIIVSVMV 331
            + +  L L PV  F +   +V +G  PE+F         L G  +++  V +
Sbjct: 255 NRSAPFLHLMPV--FGSVMAIVLLGEKPELFH--------LAGYAMVVAGVFI 297