Pairwise Alignments

Query, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1022 a.a., Excinuclease ABC subunit A from Xanthomonas campestris pv. campestris strain 8004

 Score = 1339 bits (3465), Expect = 0.0
 Identities = 657/940 (69%), Positives = 773/940 (82%), Gaps = 1/940 (0%)

Query: 1   MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MD I IRGARTHNLKNI+L +PRDKLIVITGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 37  MDFIRIRGARTHNLKNIDLDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 96

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120
           ARQFLS+MEKPD+DHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLL+ARVG+PRC
Sbjct: 97  ARQFLSVMEKPDLDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRC 156

Query: 121 PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID 180
           P HG PL AQTVSQMVD +L +  + R MLLAPV+  RKGEH ++ E L AQG++R R+D
Sbjct: 157 PDHGFPLEAQTVSQMVDHMLTLDPEQRYMLLAPVIRDRKGEHAQVFEQLRAQGFVRVRVD 216

Query: 181 GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG 240
           GE+ ++   P L L  KHTIE V+DRF+ R DI+QRLAESFETAL+L  G+  V S+D+ 
Sbjct: 217 GELYEIDAVPPLALRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGEGMVAVQSLDDA 276

Query: 241 TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL 300
           T    +FS+ ++CP C YS+ ELEPR+FSFN P GACP+CDGLGV +FFDPDRV+ +PEL
Sbjct: 277 TAAPHLFSSKYSCPVCDYSLPELEPRLFSFNAPVGACPSCDGLGVAEFFDPDRVVVHPEL 336

Query: 301 SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYGSGKDSIAFKY 360
           SL+ GA+RGWDRRN YYFQ+++SLA HYKFDV+A +  L  KVR+ VL+GSG + I+F Y
Sbjct: 337 SLSAGAVRGWDRRNAYYFQLIASLAKHYKFDVDAVWNTLPAKVRQAVLFGSGDEVISFTY 396

Query: 361 INDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCGGSRLREEARH 420
             D G    R H FEGIL N++RRYRETES AVR+EL K+++ Q C +C G+RL   AR+
Sbjct: 397 FTDAGGRTTRKHRFEGILPNLERRYRETESPAVREELTKYVSQQPCPACNGTRLNRAARN 456

Query: 421 VFIGDLNLPKLTVWSIGEALDYFDKLEFTGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL 480
           VF+ D  LP+L V  + EAL++F  L   G + +IA KI+KE+ +RLGFLV+VGL+YL+L
Sbjct: 457 VFVADRPLPELVVLPVNEALNFFRGLSLPGWRGEIASKIVKEIGERLGFLVDVGLDYLTL 516

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT 540
            R A+TLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL TL  LRDLGNT
Sbjct: 517 ERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNT 576

Query: 541 VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDESVTGQYISGKRNIHI 600
           VIVVEHDEDAIR+ADH++DIGPGAGVHGGE+   G ++ I+    S+TGQY+SGKR I I
Sbjct: 577 VIVVEHDEDAIRLADHVLDIGPGAGVHGGEICAQGTLQDILESPRSLTGQYLSGKRRIEI 636

Query: 601 STPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTFFKIAHK 660
              R   +PK ++ L GA GNNL+NVDL IP GL TC+TGVSGSGKSTLINDT F +A  
Sbjct: 637 PKQRHKPNPKMMLHLRGATGNNLKNVDLEIPAGLLTCITGVSGSGKSTLINDTLFTLAAN 696

Query: 661 MLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQE 720
            +NGA+    AP+  +  ++  DKVVDIDQSPIGRTPRSNPATYTG+FTP+RE+FA   E
Sbjct: 697 EINGAS-HTVAPHREVENLDLFDKVVDIDQSPIGRTPRSNPATYTGMFTPLRELFAQVPE 755

Query: 721 SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY 780
           SR RGY  GRFSFNV+GGRCEACQGDG+IKVEMHFLPDVYVPCD C GKRYNRETLE+RY
Sbjct: 756 SRARGYSPGRFSFNVRGGRCEACQGDGMIKVEMHFLPDVYVPCDVCHGKRYNRETLEIRY 815

Query: 781 KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL 840
           KG NI +VLQMTVEDA   F+ VP+IARKL+TL+DVGLSY++LGQSATTLSGGEAQRVKL
Sbjct: 816 KGFNISDVLQMTVEDALRLFEPVPSIARKLETLVDVGLSYIKLGQSATTLSGGEAQRVKL 875

Query: 841 AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW 900
           +KELS+RDTG+TLYILDEPTTGLHF DI+ LL VLH+L+  GNT+VVIEHNLDVIKTADW
Sbjct: 876 SKELSRRDTGRTLYILDEPTTGLHFHDIEALLGVLHKLRDEGNTVVVIEHNLDVIKTADW 935

Query: 901 IIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLL 940
           I+DLGPEGG  GGTIL +GTPEDVA H  S+T +FL  +L
Sbjct: 936 IVDLGPEGGHRGGTILVSGTPEDVAAHKASYTGQFLAKML 975