Pairwise Alignments

Query, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

 Score = 1542 bits (3992), Expect = 0.0
 Identities = 761/940 (80%), Positives = 841/940 (89%), Gaps = 1/940 (0%)

Query: 1   MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKIE+RGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120
           ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITE+YDYLRLL+ARVGEPRC
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120

Query: 121 PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID 180
           P H  PL AQT+SQMVDKVLE+PE S++MLLA +V  RKGEHVK LE L+AQG+IRARID
Sbjct: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180

Query: 181 GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG 240
           GE CDLTDPP L+LH KHTIEV+VDRFKVRSD+QQRLAESFETALELSGGI VVA M EG
Sbjct: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPM-EG 239

Query: 241 TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL 300
             EE IFSANFACPHCGYSM ELEPR+FSFNNPAGACPTCDGLGVQQ+FDPDRVI +  L
Sbjct: 240 DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299

Query: 301 SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYGSGKDSIAFKY 360
           SLA GAIRGWD++NFYYFQML++LA+HY FDV  PF +LS K+++I+L+GSG+  I FKY
Sbjct: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359

Query: 361 INDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCGGSRLREEARH 420
           INDRGD+ ++ HPFEGIL+N++RRYR+TESN+VR+ELAK+I+ + C SC G+RL+ EAR+
Sbjct: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419

Query: 421 VFIGDLNLPKLTVWSIGEALDYFDKLEFTGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL 480
           VFI D  LP +   SI +AL +F +L+  GQ+AQIAEK++KE+ DRL FLVNVGLNYL+L
Sbjct: 420 VFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT 540
           SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTL HLR+LGNT
Sbjct: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539

Query: 541 VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDESVTGQYISGKRNIHI 600
           V+VVEHDEDAIRMADH+IDIGPGAGVHGG V+ +G +E+IIA   S+TGQY+SG + I +
Sbjct: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599

Query: 601 STPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTFFKIAHK 660
              RTP D K+ +EL GA GNNL+NVDL+IP+GLFTCVTGVSGSGKSTLINDTFFKIAH 
Sbjct: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659

Query: 661 MLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQE 720
            LNGAT   PAPY  I G+E  DKV+DIDQSPIGRTPRSNPATYTGIFTPIRE+FAGTQE
Sbjct: 660 ALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719

Query: 721 SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY 780
           SR+RGYQ GRFSFNV+GGRCEACQGDG+IKVEMHFLPDVYVPCD CKGKRYNRETLEVRY
Sbjct: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779

Query: 781 KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL 840
           KGK I EVL MTVEDAREFFD VP IARKLQTLMDVGLSY+RLGQSATTLSGGEAQRVKL
Sbjct: 780 KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL 839

Query: 841 AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW 900
           A+ELSKRDTGKTLYILDEPTTGLHF DIQ LL VLHRL+ HGNT+VVIEHNLDVIKTADW
Sbjct: 840 ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 901 IIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLL 940
           IIDLGPEGG GGG I+A GTPEDVA    SHTARFLKPLL
Sbjct: 900 IIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939