Pairwise Alignments

Query, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1003 a.a., excinuclease ABC subunit A from Synechococcus elongatus PCC 7942

 Score = 1030 bits (2664), Expect = 0.0
 Identities = 537/975 (55%), Positives = 689/975 (70%), Gaps = 40/975 (4%)

Query: 2   DKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D+I +RGAR HNL+N++L +PR++LIV TG+SGSGKSSLAFDT++AEGQRRYVESLSAYA
Sbjct: 26  DQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYA 85

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCP 121
           RQFL  ++KPDVD IEGLSPAISI+QKSTSHNPRSTVGT+TEIYDYLRLLF R G P CP
Sbjct: 86  RQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGAPHCP 145

Query: 122 THGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARIDG 181
              + +A QT+ QMVD++ E+P+ SR  +LAPVV G+KG H KLL  L+A+G++R RI+G
Sbjct: 146 HCDRSIAPQTIDQMVDRLAELPDRSRFQILAPVVRGKKGTHKKLLSSLAAEGFVRVRING 205

Query: 182 EVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASM--DE 239
           EV +L+D   LD +  HTIE+VVDR   ++ IQ+RL +S  T L  S GIAV+  +  D 
Sbjct: 206 EVRELSDSIELDKNHAHTIEIVVDRLVQKAGIQERLVDSLTTCLRRSEGIAVIDVLPGDR 265

Query: 240 GTT-------------------------EELIFSANFACPHCGYSMAELEPRIFSFNNPA 274
           G                            EL+FS NFACP  G  M EL PR+FSFN+P 
Sbjct: 266 GNVITLPVEHHSSRAADTGAEYNREPQGYELVFSENFACPEHGAVMEELSPRLFSFNSPY 325

Query: 275 GACPTCDGLGVQQFFDPDRVITNPELSLAGGAIRGWDRRNF-YYFQMLSSLADHYKFDVE 333
           GAC  C GLG  + F P+ V+ +P L +   AI  W  ++  YYF +L  +A+   F++ 
Sbjct: 326 GACSHCHGLGTLRTFSPELVVPDPNLPVYA-AIAPWSEKDHSYYFNLLCGVAEVSGFEIS 384

Query: 334 APFEQLSDKVRKIVLYGSGKDSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAV 393
             ++ L+   +  +L+GS  + IA +  +   D  + + PFEG++  ++R+YRET S   
Sbjct: 385 DRWQDLTPDQQHAILFGSS-EPIAVETDSRFRDRHLYHRPFEGVIPILERQYRETSSEVY 443

Query: 394 RDELAKFINTQACQSCGGSRLREEARHVFIGDLNLPKLTVWSIGEALDYFDKLE------ 447
           + +L K++  Q C+ C G RL+ E+  V +G   +  LT  S+ E L+  + L       
Sbjct: 444 KQKLEKYLVDQTCEVCHGLRLKPESLAVRMGPYRITDLTSVSVRECLNKIEALIGSDNRE 503

Query: 448 --FTGQKAQIAEKILKEVRDRLGFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGL 505
              T ++ QI + +L+E++ RL FL++VGL+YL+L R A TLSGGEAQRIRLA+QIGAGL
Sbjct: 504 PLLTARQMQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQIGAGL 563

Query: 506 VGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRMADHIIDIGPGAG 565
            GV+YVLDEPSIGLHQRDN+RLL TLI LRDLGNT+IVVEHDED IR ADH++DIGPGAG
Sbjct: 564 TGVLYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDIGPGAG 623

Query: 566 VHGGEVICDGPIEKIIACDESVTGQYISGKRNIHISTPRTPFDPKQVIELYGARGNNLRN 625
           VHGG ++  G + +++  +ES+TG Y+SG+R I     R   + ++++ L GA  NNL+N
Sbjct: 624 VHGGRIVAQGNLNQLLTAEESLTGAYLSGRRRIATPDSRRAGNGRRLL-LQGANRNNLQN 682

Query: 626 VDLTIPIGLFTCVTGVSGSGKSTLINDTFFKIAHKMLNGATVDEPAPYDRIVGMEQCDKV 685
           +D+ IP+G   C+TGVSGSGKSTLIN+         L G  V  P     + G +  DKV
Sbjct: 683 LDVEIPLGKLVCITGVSGSGKSTLINELLHPALEHSL-GLKVPFPKGLAVLKGTKAIDKV 741

Query: 686 VDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQESRTRGYQVGRFSFNVKGGRCEACQG 745
           + IDQSPIGRTPRSNPATYTG F PIR++FA T E++ RGYQ G+FSFNVKGGRCEAC G
Sbjct: 742 IVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATTEAKARGYQPGQFSFNVKGGRCEACGG 801

Query: 746 DGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRYKGKNIHEVLQMTVEDAREFFDAVPA 805
            G+  +EM+FLPDVYV CD CKG RYNRETL+V+YKGK I +VL MTVE+A +FF+ +P 
Sbjct: 802 QGVNVIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGKTIADVLNMTVEEAAQFFENIPQ 861

Query: 806 IARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHF 865
            + +LQTL+DVGL YVRLGQ A TLSGGEAQRVKLA EL++R TGKTLY++DEPTTGL F
Sbjct: 862 ASSRLQTLVDVGLGYVRLGQPAPTLSGGEAQRVKLATELARRATGKTLYLIDEPTTGLSF 921

Query: 866 ADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADWIIDLGPEGGGGGGTILATGTPEDVA 925
            D+  LLDV+ RL   GN+IVVIEHNLDVI+ ADWIIDLGPEGG  GG I+  G PE VA
Sbjct: 922 YDVHKLLDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDLGPEGGDRGGEIVVCGEPEIVA 981

Query: 926 LHPTSHTARFLKPLL 940
            H  SHT R+L  +L
Sbjct: 982 THNQSHTGRYLAQVL 996