Pairwise Alignments

Query, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 957 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN

 Score = 1284 bits (3322), Expect = 0.0
 Identities = 646/959 (67%), Positives = 767/959 (79%), Gaps = 20/959 (2%)

Query: 1   MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           M++I IRGARTHNLKN+NL +PR KL+VITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MEQIRIRGARTHNLKNVNLDLPRHKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120
           ARQFL LMEKPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TEI+DYLRLLFARVG P C
Sbjct: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGTPYC 120

Query: 121 PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID 180
           P H  PL AQ+VSQMVD  L +PE+++LM+LAPVV  RKGEHV+L E + AQG+IR R+ 
Sbjct: 121 PDHEIPLEAQSVSQMVDAALALPEETKLMILAPVVANRKGEHVELFEEMQAQGFIRFRVR 180

Query: 181 G----------EVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGG 230
                      ++ ++   P L  + KHTI+VVVDR KVR D++QRLAESFETAL L+ G
Sbjct: 181 SGGGTANEGVAKIYEVDSLPKLKKNDKHTIDVVVDRLKVRPDMKQRLAESFETALRLADG 240

Query: 231 IAVVASMDEGTTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFD 290
            A+   MD  T +E +FS+ FACP C YS+ ELEPR+FSFNNP GACP CDGLG   FFD
Sbjct: 241 RAIALEMD--TDKEHLFSSKFACPICSYSLQELEPRLFSFNNPMGACPECDGLGQITFFD 298

Query: 291 PDRVITNPELSLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYG 350
           P RV+ +P LSLA GA++GWDRRN +YFQML SLA  Y+FD++   E L +KVRKI+L+G
Sbjct: 299 PKRVVAHPSLSLAAGAVKGWDRRNQFYFQMLQSLAAFYEFDIDTAVEDLPEKVRKILLFG 358

Query: 351 SGKDSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCG 410
           SGK  I F YIN+RG   VR H FEGI+ N++RRYRET+S AVR+ELAK+ N Q C +C 
Sbjct: 359 SGKQEIPFSYINERGRTSVREHVFEGIIPNLERRYRETDSVAVREELAKYQNNQPCPACA 418

Query: 411 GSRLREEARHVFIGD----LNLPKLTVWSIGEALDYFDKLEFTGQKAQIAEKILKEVRDR 466
           G+RLR EAR V IG       + +++ W + +AL YF  L   G K +IA+K++KE+  R
Sbjct: 419 GTRLRREARFVRIGSDGDARGIFEISGWPLRDALGYFQTLRLEGSKREIADKVVKEIVAR 478

Query: 467 LGFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNER 526
           L FL NVGL+YLSL RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRDN+R
Sbjct: 479 LMFLNNVGLDYLSLERSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDR 538

Query: 527 LLQTLIHLRDLGNTVIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDES 586
           L+ TL HLRDLGN+VIVVEHDED IRMAD+++D+GPGAG HGG VI +G  +++ A   S
Sbjct: 539 LIATLKHLRDLGNSVIVVEHDEDMIRMADYVVDMGPGAGEHGGMVIAEGTPKQVQANAAS 598

Query: 587 VTGQYISGKRNIHISTPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGK 646
           +TGQY+SG RNI     R   D K+ + +  A GNNL++V L +P+GL TCVTGVSGSGK
Sbjct: 599 MTGQYMSGARNIEFPDERKAPDEKR-LRIVEAYGNNLQHVSLDLPVGLLTCVTGVSGSGK 657

Query: 647 STLINDTFFK-IAHKMLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYT 705
           STLINDT +  +AH +   AT  EPAPY+ I G+E  DKV+++DQSPIGRTPRSNPATYT
Sbjct: 658 STLINDTLYHAVAHHLYGSAT--EPAPYESIEGLEHFDKVINVDQSPIGRTPRSNPATYT 715

Query: 706 GIFTPIREIFAGTQESRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDA 765
           G+FTPIRE+FAG   ++ RGY+ GRFSFNVKGGRCE+CQGDG++KVEMHFLPDVYVPCD 
Sbjct: 716 GLFTPIRELFAGVPAAKERGYEAGRFSFNVKGGRCESCQGDGVLKVEMHFLPDVYVPCDV 775

Query: 766 CKGKRYNRETLEVRYKGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQ 825
           C GKRYNRETL+V+YKGKNI EVL MTVE+A EFF  VP +ARKL+TL+DVGL Y+RLGQ
Sbjct: 776 CHGKRYNRETLDVQYKGKNISEVLDMTVENAYEFFKPVPVVARKLKTLLDVGLGYIRLGQ 835

Query: 826 SATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTI 885
           SATTLSGGEAQRVKL+ ELSKRDTG+TLYILDEPTTGLHF DI LLL+V+HRL+  GNT+
Sbjct: 836 SATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIALLLEVIHRLRDQGNTV 895

Query: 886 VVIEHNLDVIKTADWIIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLLERDA 944
           V+IEHNLDVIKTADW+IDLGPEGG GGG I+A GTPE VA    S T ++L PLL+R A
Sbjct: 896 VIIEHNLDVIKTADWVIDLGPEGGAGGGQIIAQGTPEQVAKSKASFTGKYLAPLLKRAA 954