Pairwise Alignments

Query, 491 a.a., RNA polymerase sigma-54 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 502 a.a., RNA polymerase sigma-54 factor from Pseudomonas stutzeri RCH2

 Score =  559 bits (1441), Expect = e-164
 Identities = 297/502 (59%), Positives = 372/502 (74%), Gaps = 12/502 (2%)

Query: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPS-- 58
           MK SL LK+GQQLTMTPQLQQAIRLLQLS+L+LQQEIQ+ALDSNP+LE EE+  D  S  
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEREEDGDDFDSSD 60

Query: 59  ---ERKQDLADTDFSETSAQP---QEQDNSTVDIAESLTKESLPEELPMDTTWDEVFTAS 112
              E      DT   ++S+Q    +E  +S     +    E +P ELP+DT W++++  S
Sbjct: 61  PMAEAADRPGDTGTEKSSSQESTYEEPSHSGESADDGDWGERIPSELPVDTAWEDIYQTS 120

Query: 113 PNSGSGASREDDMPFQGETSEG--LYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLT 170
            +S   ++ +D+  F   TS G  L  HL WQ NL P S+TD  IAT +ID I+DQGYL 
Sbjct: 121 ASS-LPSNDDDEWDFTSRTSNGISLQSHLLWQLNLAPMSDTDRLIATTLIDCINDQGYLE 179

Query: 171 QSTEDILEAMGNP-EIELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFSPDTPHLE 229
           ++ ++I+++     EIELDEVE VL+RIQ F+P G+ ARDL ECLL+QL   S  TP L 
Sbjct: 180 ETLQEIVDSFDPELEIELDEVEVVLRRIQQFEPAGIGARDLRECLLLQLRQLSERTPWLS 239

Query: 230 NARMLIKDHLDLIAARDFRLLMRKTKLKEDELRDSIALIQTLNPRPGLLITAVDEEYVVP 289
            A+ L+ D+LD++ +RD+ LLMR+ KLKEDELR  I LIQ+LNPRPG  I A + EYVVP
Sbjct: 240 EAQRLVSDYLDILGSRDYSLLMRRMKLKEDELRQVIELIQSLNPRPGSQIEASEPEYVVP 299

Query: 290 DVSVSKKNGRWVVELNPDCMPKINVNQQYAAMARSSKNQADSQFIRGHLQEAKWFIKSLE 349
           DV V K N RW+VELN + MP++ VN QYA   + + + AD+ F+R  LQEA+WFIKSL 
Sbjct: 300 DVIVRKHNDRWLVELNQEAMPRLRVNAQYAGFVKRADSSADNTFMRNQLQEARWFIKSLL 359

Query: 350 SRNETLLKVANCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPK 409
           SRNETL+KVA  IV++Q+ F E+G+EAMKP+VL+DIAEAV MHESTISRVTTQKYMHTP+
Sbjct: 360 SRNETLMKVATQIVEHQRAFLEHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPR 419

Query: 410 GLFELKYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVA 469
           G++ELKYFFSSHV T +GGECSSTAIRA IKKLVAAENQKKPLSDSK+A LL  QGI VA
Sbjct: 420 GIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVA 479

Query: 470 RRTIAKYREAMLIPPSNQRKSL 491
           RRT+AKYRE++ I PS++RK L
Sbjct: 480 RRTVAKYRESLGIAPSSERKRL 501