Pairwise Alignments

Query, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 841 a.a., 3'-to-5' exoribonuclease RNase R from Xanthomonas campestris pv. campestris strain 8004

 Score =  612 bits (1577), Expect = e-179
 Identities = 332/756 (43%), Positives = 467/756 (61%), Gaps = 30/756 (3%)

Query: 3   KDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLRAM 62
           KDPH +RE  +Y  PI SRE I++ L     P T + IA  L + D  +++AL +RL AM
Sbjct: 105 KDPHADREALRYAEPIASREAILQLLEDCDGPQTAEEIAEQLGLSD--RIDALGKRLAAM 162

Query: 63  ERDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHGD 122
            R+ +LV  R   Y   ++  LI+G V+ + EG+GF KPDEGGDDLF+   +M    HGD
Sbjct: 163 VREAQLVQNRRGGYAPVQQTSLIAGVVIANPEGFGFLKPDEGGDDLFLPPFEMRKVMHGD 222

Query: 123 KVLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIASED 182
           + LA   G+DR+GRRE  I R+++ R + ++GRF  + G+A+V  DDKR+ + + IA + 
Sbjct: 223 RALANVTGIDRRGRREGAIARVLERRMSRMIGRFFYEHGVAYVDPDDKRVQRNVQIAPDG 282

Query: 183 RNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAIE 242
              AR+G +VV EL   P     A GK+  VLG ++ P + +E+A+  ++LPH +   + 
Sbjct: 283 IGEAREGQLVVCELIAPPDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVL 342

Query: 243 KKLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIADV 302
            +   +P  V      GRVDLR +PLVTIDGEDA+DFDDAVY E   + G+RL VAIADV
Sbjct: 343 DEAAAVPLVVEPQMIGGRVDLRQMPLVTIDGEDAKDFDDAVYCEPN-ADGFRLVVAIADV 401

Query: 303 SYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISAR 362
           S YVR  + LD EA+ R  SVYFP  V+PMLPE +SNG+CSL P VDR+C V +M +   
Sbjct: 402 SNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGRD 461

Query: 363 GKLSGYKFYPAVMHSHARFTYTQV-AAMLEG--------GPIAPEHEALFVHLQCLQSLY 413
           G+++G +FY AVM+SHAR TY QV  A+ E         GP+ P+       +Q L  LY
Sbjct: 462 GEVTGSRFYEAVMNSHARLTYNQVWKAVGEDDADTKAFIGPLLPQ-------VQRLHQLY 514

Query: 414 LALDEQRAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFV 473
             L + R  RGAI FET E +F+ ++  ++ +     RN AHK+IEECMI ANV AA+++
Sbjct: 515 NVLSKARTHRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYL 574

Query: 474 KKHKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAEL 533
                   YRVHE P E K  +  EFL E  LS+    +  P DY  ++ ++  RPDA L
Sbjct: 575 LSMHVPAPYRVHERPPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAAL 634

Query: 534 IQVMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEAN 593
           ++ +LLRS   A+Y+P+N GHFGLALE YAHFTSPIRRYPDL++HR I++ L    G + 
Sbjct: 635 LESVLLRSQSLAVYSPENNGHFGLALEAYAHFTSPIRRYPDLLVHRAIKHALT---GASP 691

Query: 594 EKWTPDGGYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIAS 653
           EK      Y Y   ++  L  +CS   RRADEA R+V +  +  +M+ HVG  F+ VI+ 
Sbjct: 692 EK------YIYAPRQMAALSLQCSERGRRADEAEREVDERYRAAWMEKHVGGQFDGVISG 745

Query: 654 VTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAV 713
           VT+FGLFV L    ++GLVH++ L  DYYQFDP+R+ + GE  G+ +++GDPV V V   
Sbjct: 746 VTSFGLFVELTQSKVNGLVHVTQLPQDYYQFDPIRKTMTGERRGREFRLGDPVRVLVLKA 805

Query: 714 NLDDRQIDLMMLGDSGKGGRRKAAPSRDKPMTARER 749
           ++++R+ID  +  +          P R+KP   +++
Sbjct: 806 SMEERKIDFRLAEEGAPA--EAPLPPREKPAKRKKK 839