Pairwise Alignments

Query, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 877 a.a., RNAse R from Pseudomonas syringae pv. syringae B728a

 Score =  775 bits (2002), Expect = 0.0
 Identities = 404/817 (49%), Positives = 539/817 (65%), Gaps = 30/817 (3%)

Query: 4   DPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLRAME 63
           DP   RE +KYENPIPSRE I+++L  + SP +R+ +     +  E+Q EALRRRLRAME
Sbjct: 8   DPEAAREAEKYENPIPSRELILQHLAERGSPASREQLVEEFGLTTEDQFEALRRRLRAME 67

Query: 64  RDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHGDK 123
           RD +L++TR  +Y   +K+DLI G + GH++G+GF  PD+G DDLF+S   M + F GD+
Sbjct: 68  RDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMRLVFDGDR 127

Query: 124 VLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIASEDR 183
            LA+  G+DR+GRRE  IV +I     +IVGR+  +SG+ FV+ D+ +I QE+L+     
Sbjct: 128 ALARVSGLDRRGRREGVIVEVISRAHESIVGRYFEESGIGFVVPDNPKIQQEVLVTPGRN 187

Query: 184 NGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAIEK 243
           NGA+ G  V V++T  P    +  G V EV+G  MAPGMEI++ALR YD+PH W  A+ K
Sbjct: 188 NGAKIGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLK 247

Query: 244 KLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKP------SGGWRLWV 297
           +  ++  EV E DK  RVDLR LP VTIDGEDARDFDDAVY E KP      SGGW+L+V
Sbjct: 248 EAAKLKPEVEEKDKEHRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLYV 307

Query: 298 AIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEM 357
           AIADVS YV+  SALD E++ RGNSVYFP +V+PMLPE++SNGLCSLNPHVDRL MV EM
Sbjct: 308 AIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDRLAMVCEM 367

Query: 358 TISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAP------EHEALFVHLQCLQS 411
           TIS  G+++ Y FY  ++HSHAR TY +V+ +LE    A       E+  +  HL+ L +
Sbjct: 368 TISKTGEMTDYVFYEGIIHSHARLTYNKVSTILEQPKTAEAKSLRGEYGDVVPHLKQLYA 427

Query: 412 LYLALDEQRAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAK 471
           +Y  L   R  RGAI FET ET+ IF  +RKI +I P  RN AHK+IEECM+ ANV+ A+
Sbjct: 428 MYKVLLGARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLAANVATAQ 487

Query: 472 FVKKHKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLE-PTPADYQNVMLQIADRPD 530
           F+KKH+   LYRVH+ P  ++L   + FL E GL++  G E PTP DYQ ++  + DRPD
Sbjct: 488 FLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLTLHKGKEGPTPKDYQALLETVRDRPD 547

Query: 531 AELIQVMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKG 590
             LIQ ++LRS+ QA+Y+ DN GHFGL  E Y HFTSPIRRYPDL+ HR IR ++  ++ 
Sbjct: 548 YHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIRSKQD 607

Query: 591 -----EANEKWTPDGG-YHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVG 644
                 A     P    Y Y    LDQLGE+CS +ERRADEATRDV +WLKCE+M+D VG
Sbjct: 608 TPHVRRAGAATIPKARIYPYDDALLDQLGEQCSMSERRADEATRDVVNWLKCEYMKDRVG 667

Query: 645 DTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGD 704
           ++F  VI +VT FGLFV L D++++GLVH+++L  DYY FDP+  RL GE TG+ +++GD
Sbjct: 668 ESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPLHHRLAGERTGRNFRLGD 727

Query: 705 PVTVKVAAVNLDDRQIDLMMLGDSGKGGRRKAAPSRDKPMTARERVNREGAKMA-KTAKS 763
            V V+V  V+LD+R+ID  +            A +  KP   + R N   A  A  TA+ 
Sbjct: 728 TVEVRVMRVDLDERKIDFEI----------SEAAAAAKPTARKRRGNDTAAPAATTTAEK 777

Query: 764 SGAKSKAGSGKAASKSKSKAGTKPKKSVKDTAKKPKA 800
             A +K+G   A++K  S    +P  +    A+  K+
Sbjct: 778 DKAPAKSGRRSASTKESSPEAYRPSDAAAKNAEVRKS 814



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 728 SGKGGRRKAAPSRDKPMTARERVNREGAKMAKTAKSSGA-KSKAGS 772
           SGK  R  +APS  KP  ++ R        A  AKSSGA K KA S
Sbjct: 833 SGKSDRSGSAPSSGKP-ASKHRKGSSKTGSAPAAKSSGARKPKAKS 877