Pairwise Alignments

Query, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 878 a.a., ribonuclease R from Pseudomonas fluorescens SBW25-INTG

 Score =  769 bits (1986), Expect = 0.0
 Identities = 411/860 (47%), Positives = 542/860 (63%), Gaps = 56/860 (6%)

Query: 4   DPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLRAME 63
           DP   RE +KYENPIPSRE I+ +L  + SP +R+ +     +  E+QLEALRRRLRAME
Sbjct: 8   DPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALRRRLRAME 67

Query: 64  RDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHGDK 123
           RD +L++TR  +Y   +K+DLI G + GH++G+GF  PD+G DDLF+S   M + F GD+
Sbjct: 68  RDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMRLVFDGDR 127

Query: 124 VLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIASEDR 183
            LA+  G+DR+GRRE  IV ++     +IVGR+  + G+ FV+ D+ ++ QE+LI     
Sbjct: 128 ALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEVLITPGRN 187

Query: 184 NGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAIEK 243
             A+ G  V V++T  P    +  G + EV+G  MAPGMEI++ALR YD+PH W  A+ K
Sbjct: 188 GAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLK 247

Query: 244 KLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKP------SGGWRLWV 297
           +  ++  EV E DK  R+DLR LP VTIDGEDARDFDDAVY E KP      SGGW+L+V
Sbjct: 248 EAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFV 307

Query: 298 AIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEM 357
           AIADVS YV+  SALD EA+ RGNSVYFP +VIPMLPE++SNGLCSLNP VDRL MV EM
Sbjct: 308 AIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEM 367

Query: 358 TISARGKLSGYKFYPAVMHSHARFTYTQVAAML------EGGPIAPEHEALFVHLQCLQS 411
           TIS  G+++ Y+FY AV+HS AR TY +V+ +L      E   +  E+  +  HL+ L +
Sbjct: 368 TISKTGEMTDYQFYEAVIHSQARLTYNKVSTILEQPKTSEAKALRGEYGHVVPHLKQLYA 427

Query: 412 LYLALDEQRAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAK 471
           LY  L   R  RGAI FET ET+ +F  +RKI  I P  RN AHK+IEECM+ ANV+ A+
Sbjct: 428 LYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVATAE 487

Query: 472 FVKKHKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLE-PTPADYQNVMLQIADRPD 530
           F+KKH+   LYRVH+ P  ++L   + FL E GLS+  G + PTP DYQ ++  I DRPD
Sbjct: 488 FLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPD 547

Query: 531 AELIQVMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKG 590
             +IQ ++LRS+ QA+Y+ DN+GHFGL  E Y HFTSPIRRYPDL+ HR IR ++  ++ 
Sbjct: 548 YHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQN 607

Query: 591 -----EANEKWTPDGG-YHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVG 644
                 A     P    Y Y    L+QLGE+CS +ERRADEATRDV +WLKCEFM+D VG
Sbjct: 608 TPHVQRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKDRVG 667

Query: 645 DTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGD 704
           ++F  VI +VT FGLFV L D++++GLVH+++L  DYY FDP+  RL GE TG+ +++GD
Sbjct: 668 ESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTGRSFRLGD 727

Query: 705 PVTVKVAAVNLDDRQIDLMM--------------------LGDSGKGGRRKAAPSRDKPM 744
            V V+V  V+LD+R+ID  M                        GKG   KAA +   P 
Sbjct: 728 TVEVQVMRVDLDERKIDFGMPDKPAEAPNSRKKRGSEPAAPASKGKGAPAKAAAAEPAPA 787

Query: 745 TARERVNRE------------GAKMAKTAKSSGAKSK-----AGSGKAASKSKSKAGTKP 787
            A  R + +             AK A+  KS   K +        GKAAS  KS+   KP
Sbjct: 788 KAGRRSSAKDKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGKSREAEKP 847

Query: 788 KKSVKDTAKKPKAAKRSTRK 807
                   K P  A  +  K
Sbjct: 848 SSKPSKHRKGPPKAGSAPAK 867