Pairwise Alignments

Query, 246 a.a., RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 249 a.a., 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

 Score =  229 bits (583), Expect = 5e-65
 Identities = 116/244 (47%), Positives = 165/244 (67%), Gaps = 1/244 (0%)

Query: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61
           K+   I G++AV + +++  + + E+ +  G ++ RLT +  QA+  G  ++  + + LD
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 62  EKAESTQHQGIVARVKAAKILAEHDLDELL-AKTDLPFLLILDGVTDPHNLGACLRNADA 120
                 +HQG+ AR  AA++ AE++L+ L+ A      +LILDGV DPHNLGACLR+A A
Sbjct: 63  GVGGQVRHQGVAARYAAARLWAENELEGLVEAAQGRALVLILDGVQDPHNLGACLRSAAA 122

Query: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180
           AGV  +++PKD S  + A V K + GAA+ +P+  VTNLAR +R LQ++GVW+ G AGEA
Sbjct: 123 AGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEA 182

Query: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEA 240
           +  LY  DL+G + + +G EG GLRRL+RE CD LV IPM G + SLNVSVATG+ LFEA
Sbjct: 183 EASLYSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEA 242

Query: 241 VRQR 244
           VRQR
Sbjct: 243 VRQR 246