Pairwise Alignments

Query, 246 a.a., RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 275 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Rhodopseudomonas palustris CGA009

 Score =  135 bits (339), Expect = 1e-36
 Identities = 87/241 (36%), Positives = 126/241 (52%), Gaps = 25/241 (10%)

Query: 6   IIFGIHAVEALLKHSPERIIELWLLQGRE--------DERLTPLIRQAKAFGTSIQVTSR 57
           I++G H V A L +   +  +LWL +           D R+ P I           V   
Sbjct: 40  ILYGWHTVTAALANPQRKFRKLWLTENAARRLAEENIDTRIAPEI-----------VRPS 88

Query: 58  KVLDEKAESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRN 117
           ++  +      HQG++A    A  L    +D L        +L+LD +TDPHN+GA LR+
Sbjct: 89  EIDRQLGPDAVHQGMLAE---ADPLQGPRIDTL---PQHGIVLVLDQITDPHNVGAILRS 142

Query: 118 ADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTA 177
           A A  VQ I+    +S   T V++K A GA E VPL  V NLAR +  L ++G   VG  
Sbjct: 143 AAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLARALTELNDRGFLTVGLD 202

Query: 178 GEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICL 237
            E D +L   +L+ PLA+ +GAEGKGLR+L+R+ C+T+  + M G + SLNVS A  + L
Sbjct: 203 SEGDDDLAAVELRQPLALVLGAEGKGLRQLTRQTCNTVARLDMPGEIKSLNVSNAAALAL 262

Query: 238 F 238
           +
Sbjct: 263 Y 263