Pairwise Alignments

Query, 246 a.a., RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 255 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Pedobacter sp. GW460-11-11-14-LB5

 Score =  125 bits (315), Expect = 6e-34
 Identities = 83/246 (33%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 2   KKQDIIFGIHAVEALLK--HSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKV 59
           +  + +FGI AV   +K     E I +   L G     L  L++       S+ V     
Sbjct: 12  ENNEFVFGIRAVIEAVKAGRDIETIYQQRGLGGDLFLELKALLKDTLIPLNSVPVEKLNR 71

Query: 60  LDEKAESTQHQGIVARVKAAKILAEHDL-DELLAKTDLPFLLILDGVTDPHNLGACLRNA 118
           + +K     HQG++A +         D+   +  K ++P +L+LD VTD  N+GA  R A
Sbjct: 72  MSQK----NHQGVIAVISPITYQNIEDIVPAVFEKGEVPLILVLDSVTDVRNMGAIARTA 127

Query: 119 DAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAG 178
              GV  I+VP  N+  + A   K + GA  ++P+ +  NL +T   LQE G+ IV    
Sbjct: 128 ACVGVHAIVVPLKNAAQINADAIKTSAGALFSIPICRHANLHKTCLFLQESGLQIVACTE 187

Query: 179 EADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLF 238
           +    +Y  D   P AI MG+E +G+        D L  IPM+G + SLNVSVA G+ L+
Sbjct: 188 KTSDFIYAPDYTMPTAIVMGSEDEGISNDLLRVADHLAKIPMAGKIESLNVSVAAGVILY 247

Query: 239 EAVRQR 244
           EAVRQR
Sbjct: 248 EAVRQR 253