Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 469 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score =  160 bits (406), Expect = 6e-44
 Identities = 115/419 (27%), Positives = 197/419 (47%), Gaps = 10/419 (2%)

Query: 15  AASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLPTISANVGYDKA 74
           +ASA++V   DL+++Y++A   DP +L A  +  +  +        LLP ++AN  Y++ 
Sbjct: 34  SASAYSV---DLMKLYREARLEDPRMLSAYLRAQSAVDSERDAFGGLLPQVTANGSYNRI 90

Query: 75  W---NDPRDDSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASALQNLISRVTK 131
               +  R+  +  + SL L Q +Y+  AW     A+    Q       A       + K
Sbjct: 91  LRKDDTQREIYNNSSYSLNLTQYLYNKQAWEAYQKAKSTTEQKGHQAEDAQAEATVDLAK 150

Query: 132 AYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQYDLASASEILA 191
            YF  L+A D  E   AE+RA ++ L++    +   +  +TD+ + +A+ DL +A E+ A
Sbjct: 151 RYFQALSADDELELIMAERRATQKSLDRVSAMYDKKMAVVTDLLDLKARVDLLAAQEVDA 210

Query: 192 ENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTD-WLKIAETNSVDLMTQRI 250
            N +  S  AL EI G        L   R      APS S D W+  A  ++  L  +  
Sbjct: 211 RNQIRLSRAALSEIVG--RPITEPLSRIRNDIALQAPSKSMDTWVAQAIDSNPLLKARES 268

Query: 251 GKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNMSVGINLSVPIFEGFK 310
             D+A   +   K GH P+L+   G A+  +    +   P  D+    I + VPI+ G  
Sbjct: 269 SLDVANAAVREGKGGHYPTLTFTLG-AQQSDVGYDNTLSPRSDSYVATIGVRVPIYSGGS 327

Query: 311 VSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQSVISSESALKA 370
            S++V+    + +   + +E   R VVK   N Y    +S+  IRA + ++ S+E +  A
Sbjct: 328 TSARVRGLYNEQLATEQDVESVRRQVVKETTNAYLTAFSSVEKIRANKNALASAEQSSIA 387

Query: 371 TQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGTLNEDDVIAIN 429
            Q  F  G    VDVL   ++ + ++R L  A+Y +I ++  L + AG   ++ V ++N
Sbjct: 388 AQKAFSYGVVNAVDVLTSVQNEFKARRDLLRAQYDFITNLFILNRWAGRPPQESVDSVN 446