Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 479 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score =  254 bits (649), Expect = 4e-72
 Identities = 160/449 (35%), Positives = 251/449 (55%), Gaps = 21/449 (4%)

Query: 7   SLCVALTLAASAHAVQAD-------DLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRA 59
           SL VA++ A+S     A+        LL +YQQA+ N+  +  ++A  +A  E + Q RA
Sbjct: 6   SLVVAVSFASSGLTWAAELPMPTQTGLLSVYQQAVDNNADLAASRADYDARKEAVPQARA 65

Query: 60  PLLPTISA---NVGYDKAWNDPRD--DSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQA 114
            LLP IS    N     + + PR     SG      L+Q I+    W  L  AE +  QA
Sbjct: 66  GLLPNISGSAQNSSTRTSIDQPRAVASRSGNLYQATLSQPIFRADRWFQLQAAEASNEQA 125

Query: 115 DSTYASALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDV 174
               ++  QNLI +  ++YF VL A+DN     AE+ A +RQL+Q  +RF VGL+  TDV
Sbjct: 126 ALELSATEQNLILQSAQSYFSVLRAQDNLASTKAEEAAFKRQLDQANERFDVGLSDKTDV 185

Query: 175 HEAQAQYDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDW 234
            +AQA YD + AS ++A+  + ++++AL  +T  ++ ++  +  +    + P P+ +  W
Sbjct: 186 LQAQASYDTSRASRLIAQRQVEDAFQALVTLTNREYNSIEGI-VHTLPVLAPTPNDAKAW 244

Query: 235 LKIAETNSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEP---- 290
           +  A   +++L+      + A+ET+   KAGH P+L   A Y +G    LG ++      
Sbjct: 245 VDTAAQQNLNLLASNYAVNAAEETLRQRKAGHAPTLDAVATYQRGDNDALGFSNPNYTGR 304

Query: 291 ----DFDNMSVGINLSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNN 346
               D +  S+G+ L++PI+ G   SSQV+EA  +  Q+ +R E   R VV+N RN +  
Sbjct: 305 NYGGDVEQRSIGVQLNIPIYSGGLTSSQVREAYARLSQSEQRRESLRRQVVENTRNLHRA 364

Query: 347 VGASISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSY 406
           V   +  ++A +QS+IS++SAL+AT+ G++VGTR IVDVL+  R LY S R  ++ RY Y
Sbjct: 365 VNTDVEQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYASVRDYNNTRYDY 424

Query: 407 INSIVALKQAAGTLNEDDVIAINNGLKAE 435
           I   + LKQAAGTLN  D+  ++  LKA+
Sbjct: 425 ILDNLRLKQAAGTLNPGDLQDLSRYLKAD 453