Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 432 a.a., outer membrane channel protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  711 bits (1834), Expect = 0.0
 Identities = 359/434 (82%), Positives = 401/434 (92%), Gaps = 4/434 (0%)

Query: 1   MKFKIRSLCVALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAP 60
           MKFK  SLC A+ LAASA +VQADDLLQIYQQALTNDPLVLQAQAQRNAL+ +IE+NRAP
Sbjct: 1   MKFKFSSLCAAIALAASASSVQADDLLQIYQQALTNDPLVLQAQAQRNALYAQIEENRAP 60

Query: 61  LLPTISANVGYDKAWNDPRDDSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYAS 120
           LLPTISANVGYDKAW DP +DS G TG +KL QVIYDHSAWVGLSLAEKAA+QAD+ YAS
Sbjct: 61  LLPTISANVGYDKAWKDPSEDSDGFTGGVKLTQVIYDHSAWVGLSLAEKAAAQADAAYAS 120

Query: 121 ALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ 180
           ALQNLI+RVTKAYFDVL AKDNYEFQGAEKRAIERQLEQTKQRFAVGLTA+TDVHEAQAQ
Sbjct: 121 ALQNLITRVTKAYFDVLKAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAMTDVHEAQAQ 180

Query: 181 YDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKIAET 240
           YDLASA+EILAENTL+NSYEALREITGIDHK++NVLDTNRFSA  PAP++  +W+K+AE 
Sbjct: 181 YDLASATEILAENTLSNSYEALREITGIDHKSINVLDTNRFSAAAPAPAAPNEWIKMAEN 240

Query: 241 NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNMSVGIN 300
           NS DL+TQRIGKDIA+ETISLYKAGH PSLSL+AGY KG EQ  G    PD+DN S+G+ 
Sbjct: 241 NSTDLLTQRIGKDIAEETISLYKAGHYPSLSLSAGYTKGFEQTPG----PDYDNSSIGVT 296

Query: 301 LSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQS 360
           LS+PIFEGFKV+S+V++AQ++YV+ASE+LEQTYR VVK+VRNN+NNVGASISSIRAYEQS
Sbjct: 297 LSIPIFEGFKVTSKVEQAQYKYVEASEKLEQTYRRVVKDVRNNFNNVGASISSIRAYEQS 356

Query: 361 VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGTL 420
           V+SSESAL ATQ+GFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYI+S++ALKQAAGTL
Sbjct: 357 VLSSESALGATQSGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYISSVLALKQAAGTL 416

Query: 421 NEDDVIAINNGLKA 434
           NEDDVIAINNGLKA
Sbjct: 417 NEDDVIAINNGLKA 430