Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 447 a.a., type I secretion outer membrane protein, TolC family from Dechlorosoma suillum PS

 Score =  233 bits (594), Expect = 9e-66
 Identities = 150/445 (33%), Positives = 243/445 (54%), Gaps = 23/445 (5%)

Query: 4   KIRSLCVALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLP 63
           K++++ + L+    A A Q  DLLQIY++AL ND     A+    A  EK+ Q RA LLP
Sbjct: 2   KLKAVSLLLSSLFIAAAAQGADLLQIYKEALDNDAQFTAAKHTLEAGREKLPQGRAGLLP 61

Query: 64  TISANVGYDKAWNDPR-----DDSSGLTG-------SLKLNQVIYDHSAWVGLSLAEKAA 111
           T+  +V  +  WND         ++  TG       S+ L+Q ++    W+    A+   
Sbjct: 62  TLGVSV--NTMWNDVEYQRRVSGAAVATGQYNSHGYSVSLSQPLFRWQNWMQYDQAKLQV 119

Query: 112 SQADSTYASALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAI 171
           +QA++ +  A Q+LI RV +AYFDVL A++N     A+K AI +QLE  K+ F VG   I
Sbjct: 120 AQAEAQFLQARQDLILRVAQAYFDVLYAQENLRSLQAQKSAIAQQLELAKKSFEVGTATI 179

Query: 172 TDVHEAQAQYDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSS 231
           TD HEAQ++YDL++A EI AE+ L      L+ I G +   L  L T+  +   P P++ 
Sbjct: 180 TDTHEAQSRYDLSTAQEIAAESDLEIKRRNLQAIIGREAGELATLRTDT-TLEPPKPANM 238

Query: 232 TDWLKIAETNSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPD 291
            DW+  AE +++ +  Q    +I  + +S  +AGH P+L L A  +  + Q  G  + P 
Sbjct: 239 NDWVASAEKDALAVQIQEAQLEITDKEVSKQRAGHFPTLDLVATRSNAV-QTNGVQTNPL 297

Query: 292 F-------DNMSVGINLSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNY 344
           F       D+ ++G+ L++P+F+G  V S+ +EA+         LE + R      R  Y
Sbjct: 298 FPGVGYEQDSTAIGLQLNIPLFQGGAVLSKQREAEASREATRSTLEYSRRQAALGARQYY 357

Query: 345 NNVGASISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARY 404
             V   ++ +RA E +++SS+SAL + + G+EVG R  +DVLN  + +Y ++R L+ AR+
Sbjct: 358 LGVVNGLAQVRALEAALVSSKSALDSNKLGYEVGVRINIDVLNAEQQVYSTQRDLAKARF 417

Query: 405 SYINSIVALKQAAGTLNEDDVIAIN 429
             + + + LK   G+L ++D+  +N
Sbjct: 418 DTLVNQLRLKGVVGSLTDEDLQRVN 442