Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 460 a.a., type I secretion outer membrane protein, TolC family from Marinobacter adhaerens HP15

 Score =  208 bits (530), Expect = 2e-58
 Identities = 148/444 (33%), Positives = 230/444 (51%), Gaps = 14/444 (3%)

Query: 1   MKFKIRSLCVALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAP 60
           MK ++ S  + L  A  A ++   DL++ Y++AL+ D  +  A+A   A     + +++ 
Sbjct: 1   MKKRLLSGLIGLMAAQPALSM---DLVETYEKALSYDSGIAAARASFEAQQAASDVSQSA 57

Query: 61  LLPTISA-NVGYDKAWNDPRDDSS--GLTGSLKLNQVIYDHSAWVGLSLAEKAASQADST 117
           LLP I A   G     + P  D+S   L   ++L Q ++   AW     ++     A + 
Sbjct: 58  LLPQIGAFGEGNYIDVDGPSQDNSYQELNYGVQLTQPLFRADAWFRYDASKFQTESARAE 117

Query: 118 YASALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEA 177
           Y  A Q LI  V  AYF+VL A+D      A + AI+RQ EQ ++RF VGL AIT+V+EA
Sbjct: 118 YNLAQQQLILDVATAYFNVLRARDTVTTARATEAAIQRQYEQAQERFDVGLIAITEVYEA 177

Query: 178 QAQYDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKI 237
           +A YD + +  I AEN L  + E L  +TG   + L+ L  N F    P P   + W   
Sbjct: 178 RASYDDSKSQRIAAENQLNVAREQLARLTGEYAEELDNLRQN-FPLGRPDPMDPSAWEAT 236

Query: 238 AETNSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNM-- 295
           A   +  + +     +  +  +   KAGH P+L LNA Y K     +  A+ P       
Sbjct: 237 ALEQNWSIQSALFELNANEAGLREAKAGHYPTLDLNASYGKTDLNGIDGANAPITSQQDG 296

Query: 296 -----SVGINLSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGAS 350
                ++G+ L+VP++ G    + V++ +     A + L    R V  N R+ +  V  +
Sbjct: 297 TTTRGTIGLTLNVPLYSGGGTQAGVRQQRSLVTVAEQSLNTVRRDVRVNTRSLFLTVNNN 356

Query: 351 ISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSI 410
           + +  A EQ+++S  SAL AT+AG+EVGTR IV+VL+  R  Y + R  ++ARY Y+ + 
Sbjct: 357 VETASALEQTIVSRRSALDATRAGYEVGTRNIVEVLDAERAYYVALRDYANARYDYVINS 416

Query: 411 VALKQAAGTLNEDDVIAINNGLKA 434
           + LKQAAGTL+  D+I +NN L A
Sbjct: 417 LQLKQAAGTLSPQDLIELNNWLSA 440