Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 488 a.a., outer membrane channel protein TolC from Pantoea sp. MT58

 Score =  346 bits (887), Expect = 1e-99
 Identities = 198/444 (44%), Positives = 291/444 (65%), Gaps = 16/444 (3%)

Query: 4   KIRSLCVALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLP 63
           K+    + L+L   + A QA+DLLQ+YQQA  ++P +  A A R++ FEKI + R+PLLP
Sbjct: 3   KLLPFFIGLSLGGFSFASQAEDLLQVYQQARLSNPDLRSAAADRDSAFEKINEARSPLLP 62

Query: 64  TISANVGYDKAWNDPRDDSSGL-----TGSLKLNQVIYDHSAWVGLSLAEKAASQADSTY 118
            +   +G D A+N+   DSSGL     +GSL L Q I+D S W  L+L EK A   D TY
Sbjct: 63  QLG--LGADYAYNNGYRDSSGLHSNTTSGSLNLTQTIFDMSKWRALTLQEKTAGIQDVTY 120

Query: 119 ASALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQ 178
             A Q+LI     AYF+VL A D   +  A+K++I R+L+QT QRF VGL AITDV  A+
Sbjct: 121 QVAQQDLILNTATAYFNVLKAIDTLSYTEAQKQSIYRELDQTTQRFNVGLVAITDVQNAR 180

Query: 179 AQYDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKIA 238
           AQYD   A+E+ A N L N+ E LR+ITG+D+ +L  L  +RF   T  P + +  LK A
Sbjct: 181 AQYDSVLANEVTARNNLDNNVETLRQITGMDYMSLASLSIDRFR--TDKPEAVSALLKQA 238

Query: 239 ETNSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLG---DASEPDFDNM 295
           E+ ++ L++ R+ +D+A+E I   + GHMP+L L A       +  G   + S+   D++
Sbjct: 239 ESRNLSLLSARLNQDLAREQIRSAETGHMPTLDLTASTGMSNSKYGGSRANQSQGSTDSI 298

Query: 296 S----VGINLSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASI 351
           +    VG++ S+P++ G  V+SQVK+AQ+ +V ASE+LE  +R  V+ VR+++NNV ASI
Sbjct: 299 TGSNQVGLSFSLPLYSGGSVTSQVKQAQYNFVSASEQLESAHRTAVQTVRSSFNNVNASI 358

Query: 352 SSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIV 411
           SSI AY+Q+V+S++S+L A++AG++VGTRTIVDVL+ T  LY++K++LSDARYSY+ + +
Sbjct: 359 SSINAYKQAVVSAQSSLDASEAGYQVGTRTIVDVLDATTVLYNAKQQLSDARYSYLINQL 418

Query: 412 ALKQAAGTLNEDDVIAINNGLKAE 435
            +  A GTLNE  +  +N+ L  E
Sbjct: 419 NISYALGTLNEQSLQKLNSQLGKE 442