Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 478 a.a., TolC family outer membrane protein from Ralstonia sp. UNC404CL21Col

 Score =  201 bits (511), Expect = 4e-56
 Identities = 141/425 (33%), Positives = 217/425 (51%), Gaps = 17/425 (4%)

Query: 23  ADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLPTI-----SANVGYDKAWND 77
           A DLL  Y+ AL NDP    A+AQ  A  EK+ Q RA LLP I     S  + +D+    
Sbjct: 30  ATDLLSAYRAALANDPQFASARAQSLAQREKLTQGRAGLLPQIGGAWSSTRIIFDQTAPA 89

Query: 78  PRDDSSGLTG-SLKLNQVIYDHSAWVGLSLAEKAASQADSTYASALQNLISRVTKAYFDV 136
             + +   TG +L L+Q ++    W      E AA  A+++ A A  +LI+R  +AYFDV
Sbjct: 90  EFNKTFSSTGWTLSLSQPLFRWDRWETYKQGEIAAQAAEASLAQAQLDLITRTAQAYFDV 149

Query: 137 LTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQYDLASASEILAENTLA 196
           L A+D  +   A++ AI++Q EQ ++ F VG   ITD ++AQA+ D   AS I A +   
Sbjct: 150 LNAQDTLQLATAQRDAIQQQYEQARRNFDVGNANITDANDAQARRDAIDASVIAARSDFE 209

Query: 197 NSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKIAETNSVDLMTQRIGKDIAQ 256
               AL++I G     L  +     +   P P+S+  W+  A + ++ +   +     A+
Sbjct: 210 IKQSALKQIIGEPVGTLAGVRPG-VTIPLPEPASAEPWVDQARSCNLQVALAQYNLQSAE 268

Query: 257 ETISLYKAGHMPSLSL-------NAGYAKGLEQKLGDASEPDFDNMSVGINLSVPIFEGF 309
             +    AGH+PS+ L       NA   + L    G A    FD+  +G+ +S+PIF G 
Sbjct: 269 RDVKKATAGHLPSVDLVAQTGHTNASGNQYLPSLPGGAR---FDSSQIGVQVSIPIFAGG 325

Query: 310 KVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQSVISSESALK 369
            + S+V+E      +A+  LE   R   +  R  Y  V A ++ ++A E + +S+ +A  
Sbjct: 326 AIQSRVRENIALETKAANDLEFARRSAEQGARQAYIGVIAGLAQVKALEAAELSARTAYD 385

Query: 370 ATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGTLNEDDVIAIN 429
           + Q  + VG R   DVLN    L+ ++R L+ ARY  I + + LK AAG+L E DVI +N
Sbjct: 386 SNQLAYGVGVRIGTDVLNSQAQLFQARRDLARARYDTIVNGLRLKSAAGSLTEADVIQVN 445

Query: 430 NGLKA 434
             L A
Sbjct: 446 TLLTA 450