Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 435 a.a., outer membrane channel protein (RefSeq) from Shewanella sp. ANA-3

 Score =  797 bits (2059), Expect = 0.0
 Identities = 408/435 (93%), Positives = 427/435 (98%)

Query: 1   MKFKIRSLCVALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAP 60
           MKFKIRSLC ALTLAASA AVQADDLLQIYQQALT+DPLVLQAQAQRNALFEKIEQNRAP
Sbjct: 1   MKFKIRSLCAALTLAASAQAVQADDLLQIYQQALTSDPLVLQAQAQRNALFEKIEQNRAP 60

Query: 61  LLPTISANVGYDKAWNDPRDDSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYAS 120
           LLPTISANVGYDKAWNDP+ D+SGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYAS
Sbjct: 61  LLPTISANVGYDKAWNDPKSDTSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYAS 120

Query: 121 ALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ 180
           ALQNLI+RVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ
Sbjct: 121 ALQNLITRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ 180

Query: 181 YDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKIAET 240
           YDLASA+EILAENTLANSYEALREITGIDHK +NVLDTNRFSAVTPAP+SS++WLKIAET
Sbjct: 181 YDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSSEWLKIAET 240

Query: 241 NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNMSVGIN 300
           NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGY KGLEQK GD +EPDFDN++VG+N
Sbjct: 241 NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYNKGLEQKTGDVNEPDFDNVNVGVN 300

Query: 301 LSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQS 360
           LS+PIFEGFKV+SQVKEAQFQYV+ASE+LEQTYR VVKNVRNNYNNVGASISSIRAYEQS
Sbjct: 301 LSIPIFEGFKVTSQVKEAQFQYVEASEKLEQTYRSVVKNVRNNYNNVGASISSIRAYEQS 360

Query: 361 VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGTL 420
           VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSI+ALKQAAGTL
Sbjct: 361 VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIIALKQAAGTL 420

Query: 421 NEDDVIAINNGLKAE 435
           NEDDVI+INNGLKAE
Sbjct: 421 NEDDVISINNGLKAE 435