Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  206 bits (524), Expect = 2e-57
 Identities = 121/350 (34%), Positives = 198/350 (56%), Gaps = 2/350 (0%)

Query: 34  GYLLATLCLIALAVILIFNINKLIRHLRQLERAAHHLGEGDLSYQLDEKDAGVFNSVVHS 93
           G ++  + L  LA ++I    ++ R LR        +  GDL++            +   
Sbjct: 293 GCVVLVMLLGILAAVII--TRQITRPLRDTLAIVERIASGDLTHTEAVTRRDELGVLQQG 350

Query: 94  INRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQMVST 153
           I RMG  +   I  + D    +   A ++  ++EQ   GV  Q+ +T+  ATAM +M +T
Sbjct: 351 IQRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSAT 410

Query: 154 VQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAADTNSI 213
           V EV++NA   + AA  A   A+ GDK++G  + +I  +  ++ ++   +  L  D++ I
Sbjct: 411 VHEVARNAEQASVAASDADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVLEQDSDKI 470

Query: 214 SSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEIQQQI 273
             +++ I  VAEQTNLLALNAAIE+ARAGE GRGFAVVADEVR LA+RT ++T EI+  +
Sbjct: 471 GKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTEEIEGLV 530

Query: 274 TALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATASEEQH 333
            ALQ G +Q   +ML + T+ D +  +  +A  SL  I   V SI  M+ QIA A+E+Q 
Sbjct: 531 AALQNGTRQVSGIMLGSRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQIAAAAEQQS 590

Query: 334 AVAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRFHV 383
           +VA+EI+++I  + +++ + A  +  T  SS+++  +  ++  ++  F V
Sbjct: 591 SVADEISRSIVNVRDVSEQTAEASEETAASSVELARLGGQLQMMVSHFRV 640