Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  196 bits (497), Expect = 2e-54
 Identities = 115/354 (32%), Positives = 210/354 (59%), Gaps = 3/354 (0%)

Query: 28  YSLVTSGYLLATLCLIALAVILIFNINKLIRHLRQLERAAHHLGEGDLSYQLDEKDAGVF 87
           +++V    + ATL  +  A +LI +I   I        AA  + +G+L+  +        
Sbjct: 189 FNMVIGLLIAATLLTLVFAWMLIKSITTPIATALL---AAETIAQGNLTRPISIDGTDEA 245

Query: 88  NSVVHSINRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAM 147
             ++ ++  M + +  T+  +  ++  +   A ++  +++++ +G+++Q  + E AATA+
Sbjct: 246 GRLLLAMKTMQDKLRDTLQGISGSATQLASAAEELNAVTDESARGLVQQNDEIEQAATAV 305

Query: 148 TQMVSTVQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLA 207
            QM S V+EV++NA ST+QA+  A  SA  G  ++   V+ I  M+  +  T  +I  LA
Sbjct: 306 NQMTSAVEEVARNATSTSQASRSAATSAGDGRDLVQETVSAIERMSGDVQGTAELIISLA 365

Query: 208 ADTNSISSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATA 267
            ++  I  +++ I  +A+QTNLLALNAAIE+ARAGE GRGFAVVADEVR LA RT ++T+
Sbjct: 366 NESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTS 425

Query: 268 EIQQQITALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIAT 327
           EI++ I+++Q G +Q V  M  +   A+ T  + + A ++L  I + VE I + +  IA+
Sbjct: 426 EIERMISSIQTGTEQAVSSMRNSTERAESTLNIAKGAGQALNTINSAVEEINERNMVIAS 485

Query: 328 ASEEQHAVAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRF 381
           A+EEQ  VA E+++N+  + +L+ ++ +  N T+ +S ++  ++ ++  ++ RF
Sbjct: 486 AAEEQAQVAREVDRNLVNIRDLSAQSTNGANQTSAASTELSRLAIDLNGMVARF 539