Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  200 bits (508), Expect = 1e-55
 Identities = 118/348 (33%), Positives = 197/348 (56%), Gaps = 3/348 (0%)

Query: 34  GYLLATLCLIALAVILIFNINKLIRHLRQLERAAHHLGEGDLSYQLDEKDAGVFNSVVHS 93
           G ++A L  I L V++      + R L     +A  +  GDL+  +          ++++
Sbjct: 224 GVVIAFLVAIMLGVLIT---RMITRPLAVAVASAQRIAGGDLTQPIVSTSGDEAGQLLNA 280

Query: 94  INRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQMVST 153
           ++ M   +  TI  +   S+ +   A ++  +++++ +G+  Q  + + AATA+ QM + 
Sbjct: 281 LSDMQGGLKNTIQQIASASDQLASAAEELSAVTDESTRGLTRQNDEIQQAATAVNQMTAA 340

Query: 154 VQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAADTNSI 213
           V+EV++NA ST++A+  A + A  G   + H V  I  M  +I  +   +  LA     I
Sbjct: 341 VEEVARNAVSTSEASKSATDDAVDGRGQVDHTVKGITTMVHEITASTGAVSELAGHVREI 400

Query: 214 SSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEIQQQI 273
           S +++ I  +AEQTNLLALNAAIE+ARAGE GRGFAVVADEVR LA RT  +T EI+  I
Sbjct: 401 SKVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQASTVEIEGMI 460

Query: 274 TALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATASEEQH 333
           + +Q GA   V  M K++++A  T  +  +A  +L +I   V +I + +  IA+ASEEQ 
Sbjct: 461 STVQSGADGAVAAMGKSLSLATNTQELALRAGAALEKITLGVATINERNLVIASASEEQA 520

Query: 334 AVAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRF 381
            VA E+++N+  + +L+ ++A   N T+ SS ++  ++    SL+  F
Sbjct: 521 QVAREVDRNLINIQDLSTQSAAGANQTSASSQELSRLATSFNSLVANF 568