Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  212 bits (540), Expect = 3e-59
 Identities = 124/352 (35%), Positives = 197/352 (55%), Gaps = 7/352 (1%)

Query: 39  TLCLIALAVILIFNINKLIRHLRQLER-------AAHHLGEGDLSYQLDEKDAGVFNSVV 91
           T  L    ++L+  I   I   RQ+ R       AA  + +GDL+  L          + 
Sbjct: 291 TQLLTVAVIVLLLGIFAAILITRQITRPLDSTVIAARRIADGDLTNDLSTTRQDELGLLQ 350

Query: 92  HSINRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQMV 151
           +++  M   +   I  + +    +   A ++  +SEQ   GV +Q+ + +  ATAM QM 
Sbjct: 351 NTMQHMTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMNQMA 410

Query: 152 STVQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAADTN 211
           STVQEV+QN    +QAA  A + A HG  ++ H   +I+ +  ++ Q    ++ L  D++
Sbjct: 411 STVQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQLGEAMQRLIQDSD 470

Query: 212 SISSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEIQQ 271
            I  +I+ I  VAEQTNLLALNAAIE+ARAGE GRGFAVVADEVR+LA+RT  +T EI+ 
Sbjct: 471 KIGGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIEA 530

Query: 272 QITALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATASEE 331
            I +LQ G     E+M  +    + T  +  QA +SL EI   + +I  MS QI+ A+EE
Sbjct: 531 LIKSLQDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAAAEE 590

Query: 332 QHAVAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRFHV 383
           Q AV +EIN+++ ++ ++A ++A  T  +  S++++  +   +  ++ RF +
Sbjct: 591 QSAVTDEINRSVISVRDIADQSATATEQSAASTVELARLGSNLQDMVARFRI 642