Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  203 bits (517), Expect = 1e-56
 Identities = 117/352 (33%), Positives = 201/352 (57%), Gaps = 3/352 (0%)

Query: 30  LVTSGYLLATLCLIALAVILIFNINKLIRHLRQLERAAHHLGEGDLSYQLDEKDAGVFNS 89
           ++T+G ++A +  I L +++      + R LR     A  +  GDL+  +          
Sbjct: 192 MLTAGIVIAFVVAIMLGILIT---RMITRPLRSAIEVAQRIASGDLTQSVSSTRGDEAGH 248

Query: 90  VVHSINRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQ 149
           ++++I  M  ++ RTI  +   S+ +   A ++  ++E++ +G+  Q  + + AATA+ +
Sbjct: 249 LLNAIGTMQGNLKRTIQEISSASDQLASAAEELGAVTEESTRGLTRQNDEIQQAATAVNE 308

Query: 150 MVSTVQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAAD 209
           M + V+EV++NA ST++ +      A +G   + + V  I  M ++I ++   +  LA  
Sbjct: 309 MTAAVEEVARNAVSTSEESKSLATDAANGRGQVDNTVKGIGTMVSEITESTGSVTTLAGH 368

Query: 210 TNSISSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEI 269
              IS ++E I  +AEQTNLLALNAAIE+ARAGE GRGFAVVADEVR LA RT  +T EI
Sbjct: 369 VRDISKVLEVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQASTVEI 428

Query: 270 QQQITALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATAS 329
           +  I  +Q GA   V  M K++  A  T  + ++A  +L +I + V  I + +  IA+AS
Sbjct: 429 EGMIGTVQSGADGAVAAMSKSLATATNTQELAQRAGSALEKITSGVGMINERNMVIASAS 488

Query: 330 EEQHAVAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRF 381
           EEQ  VA E+++N+  + EL+ ++A   N T+ SS ++  ++    +++ +F
Sbjct: 489 EEQAQVAREVDRNLVNIQELSAQSAAGANQTSASSQELSRLATSFNTMVAQF 540