Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 681 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  208 bits (529), Expect = 6e-58
 Identities = 124/350 (35%), Positives = 198/350 (56%), Gaps = 6/350 (1%)

Query: 40  LCLIALAVILI-----FNINKLIR-HLRQLERAAHHLGEGDLSYQLDEKDAGVFNSVVHS 93
           L  +AL V+L+     F I + I   L     AA  + +GDL++            + ++
Sbjct: 332 LLSVALVVLLVGIFAAFLITRQITVPLNSTVIAARRIADGDLTHDSSTTRQDELGLLQNT 391

Query: 94  INRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQMVST 153
           +  M   +   I  + +    +   A  +  +SEQ   GV  Q+ + +  ATAM +M ST
Sbjct: 392 MQHMTVSLRGLIGGIGNGVTQIATAAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEMAST 451

Query: 154 VQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAADTNSI 213
           VQEV++N    +QAA  A   A HG  ++ H   +I  +  ++ Q    ++ L  D+  I
Sbjct: 452 VQEVARNTEDASQAAKQASERAAHGSSVVQHATREIGQLAGEVQQLGEAMQRLTEDSGKI 511

Query: 214 SSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEIQQQI 273
            S+I+ I  VAEQTNLLALNAAIE+ARAGE GRGFAVVADEVR+LA+RT  +T EI+  I
Sbjct: 512 GSVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQNSTTEIEALI 571

Query: 274 TALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATASEEQH 333
            ALQKG      +M  ++   + T ++  QA ++L EI   + +I  MS QI+ A+E+Q 
Sbjct: 572 QALQKGTGAASGLMDASLQRTEGTVVLARQAEQALVEINQSIGTIEQMSQQISAAAEQQS 631

Query: 334 AVAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRFHV 383
           AV EEIN+++ ++ ++A ++A  T  +  S++++  +  ++ S++ RF +
Sbjct: 632 AVTEEINRSVLSVRDIADQSASATEQSAASTVELARLGSDLQSMVARFKI 681