Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  217 bits (552), Expect = 1e-60
 Identities = 127/349 (36%), Positives = 201/349 (57%), Gaps = 1/349 (0%)

Query: 36  LLATLCLIALAVILIFNINKLI-RHLRQLERAAHHLGEGDLSYQLDEKDAGVFNSVVHSI 94
           +  TL  I L +I    I + I R LR+       +  GDL+  L    +     +   I
Sbjct: 292 ITCTLLAIILGIIAAVIITRQITRPLRETLAVVDRIASGDLTQTLAVTRSDELGVLQQGI 351

Query: 95  NRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQMVSTV 154
            RMG  +   I  + D+   +   A ++  ++EQ   GV  Q+ +T+  ATAM +M +TV
Sbjct: 352 QRMGTTLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATV 411

Query: 155 QEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAADTNSIS 214
            EV++NA   +QAA  A   A+ GDK++G  + +I  +  ++ ++   +  L  +++ I 
Sbjct: 412 AEVARNAEQASQAASNADREARDGDKVVGEAIAQIERLANEVGRSVDAMTELEQESDKIG 471

Query: 215 SIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEIQQQIT 274
            +++ I  VAEQTNLLALNAAIE+ARAGE GRGFAVVADEVR LA+RT ++T EI+  + 
Sbjct: 472 KVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVEIETLVA 531

Query: 275 ALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATASEEQHA 334
           ALQ G +Q   +ML +  +   +  +  QA  SLG I   V SI  M+ QIA A+EEQ A
Sbjct: 532 ALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAAAEEQSA 591

Query: 335 VAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRFHV 383
           VAEEI+++I  + +++ + A  +  T  SS+++  +  ++ +++ RF +
Sbjct: 592 VAEEISRSIVNVRDVSEQTASASEETAASSVELARLGGQLQTMVSRFRI 640