Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  209 bits (531), Expect = 3e-58
 Identities = 121/310 (39%), Positives = 183/310 (59%), Gaps = 7/310 (2%)

Query: 71  GEGDLSYQLDEKDAGVFNSVVHSINRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAK 130
           GEGDL  +L  +       +    N   E +  +I+ + DTS  +   A D+   ++Q +
Sbjct: 326 GEGDLRQRLPVEGNDELAQLAKGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQ 385

Query: 131 QGVLEQERQTELAATAMTQMVSTVQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKIN 190
                Q+ QT +  TA+ +M +TV E++ NAA  A  A  A N++ +G  ++    + IN
Sbjct: 386 DDSQLQKDQTMMVVTAINEMGATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTIN 445

Query: 191 DMTTQIHQTKSVIEHLAADTNSISSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAV 250
            ++  + Q  +VIE LA  T SI SI++ I  V++QTNLLALNAAIE+ARAGE GRGFAV
Sbjct: 446 QLSQDVEQVGNVIESLATHTTSIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAV 505

Query: 251 VADEVRNLAKRTSEATAEIQQQITALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGE 310
           VA+EVRNLA RT+ +T E+Q+ I  LQ  A + VE M ++ + + E    V++A  +L E
Sbjct: 506 VAEEVRNLASRTAASTDEVQKMIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTE 565

Query: 311 IVTHVESITDMSHQIATASEEQHAVAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNM 370
           I   + +ITDM+ Q+A A+EEQ  V E+IN+N++ ++E+       T  T+ +S  V   
Sbjct: 566 ISQQIGAITDMNIQVAAATEEQSTVVEDINRNVTEISEI-------TQRTSETSQAVAQA 618

Query: 371 SQEIGSLLHR 380
           SQ +  L HR
Sbjct: 619 SQSLNQLAHR 628