Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., tyrosine recombinase XerC from Pseudomonas stutzeri RCH2

 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 23/282 (8%)

Query: 6   AYALYLSRLAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALL--IHEQ 63
           AY  +L      S  S+    R + +L+   +    +Q++     Q   +R L+  +H Q
Sbjct: 7   AYFEHLRSARQLSGHSLEGYRRDLNKLLAHCER---EQIADWRGLQGRHLRQLIAELHRQ 63

Query: 64  W-SARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLL 122
             S+RS+ R +++++ + +     G       A +++    K        L  ++  +LL
Sbjct: 64  GQSSRSLARLLSSVRGLYRYLNQEGICQHDPAAGLSA---PKGERRLPKLLDTDRAMQLL 120

Query: 123 ALLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILF 182
                  D   LR  A+  LF  +GLR SEL  L L   D     ++V+ GKGNK R L 
Sbjct: 121 DG-GVEDDFIALRDQAMLELFYSSGLRLSELVGLNLDQLDLPAGLVRVL-GKGNKVRELP 178

Query: 183 LPDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIGVVGA 242
           +     + + AWL +R +               V      R    R V+ ++   GV   
Sbjct: 179 VGRKAREALQAWLPIRAL--------ANPADGAVFIGQQGRRLGARAVQMRVRQAGVREL 230

Query: 243 S----PHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
                PH LR +F + LLE + D+ +V+++ GHADI TT IY
Sbjct: 231 GQHLHPHMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIY 272