Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 75.5 bits (184), Expect = 1e-18
 Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 15/268 (5%)

Query: 18  SQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALLIHEQWSARSINRAMTAIK 77
           ++ ++AS    +++L++W  +    +L  I++    + ++ L  + +   S  R ++AI+
Sbjct: 26  AENTVASYRNDLSKLLEWMAQN-QYRLDFISFAGLQEYQSWLSEQNYKPTSKARMLSAIR 84

Query: 78  SIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALLSKRQDTYGLRTL 137
            + +    +    ++       + + K        LS  QV  LL+     Q    LR  
Sbjct: 85  RLFQY---LHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDP-QSPLELRDK 140

Query: 138 AIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPDWVEQHVIAWLNV 197
           A+  L   TGLR +EL +LT+ +       ++V+ GKG K R++ + +    + I W+  
Sbjct: 141 AMLELLYATGLRVTELVSLTMENMSLRQGVVRVM-GKGGKERLVPMGE----NAIEWIET 195

Query: 198 RKMQLGPLICHCRTTGIIV---HYRPVSRDALYRLVKDK--LGDIGVVGASPHDLRRTFI 252
              Q   L+   +T+ I+      + ++R   +  +K    +  I V   SPH LR  F 
Sbjct: 196 FLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVLRHAFA 255

Query: 253 TRLLEQNVDINTVRQMAGHADISTTTIY 280
           T LL    D+  V+ + GH+D+STT IY
Sbjct: 256 THLLNYGADLRVVQMLLGHSDLSTTQIY 283