Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score = 76.3 bits (186), Expect = 9e-19
 Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 23/269 (8%)

Query: 18  SQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQ-AMQIRALLIHEQWSARSINRAMTAI 76
           +QR+   Q+ ++ Q +         QL S   +Q  MQ +     +   A SI   ++++
Sbjct: 34  TQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLVMQGK----RQGMKASSIATRLSSL 89

Query: 77  KSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALLSKRQDTYGLRT 136
           +S +    L GE        ++  A  K      N L  +++ +LL +     D   +R 
Sbjct: 90  RSFLDFLILRGELQANPAKGVS--APRKQRTLPKN-LDVDEMAQLLEVTD--DDPLSIRD 144

Query: 137 LAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPDWVEQHVIAWLN 196
            AI  L  G GLR +EL ++ + D + +   I+V+ GKGNK R ++     ++ V  WL 
Sbjct: 145 RAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVI-GKGNKERKVWFAGQAQEWVGKWLK 203

Query: 197 VRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIGVVGA-----SPHDLRRTF 251
           +R       +     T + V    +     +R V+ ++ + G   A     SPH LR +F
Sbjct: 204 LRSQ-----LADSAETALFVS--KLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSF 256

Query: 252 ITRLLEQNVDINTVRQMAGHADISTTTIY 280
            T +LE + ++  V+++ GH +I+TT IY
Sbjct: 257 ATHMLESSNNLRAVQELLGHENIATTQIY 285