Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 321 a.a., Phage integrase:Phage integrase, N-terminal SAM-like protein from Pseudomonas syringae pv. syringae B728a

 Score =  102 bits (254), Expect = 1e-26
 Identities = 80/287 (27%), Positives = 140/287 (48%), Gaps = 15/287 (5%)

Query: 9   LYLSRLAPNSQRSIASQMRSIAQLMDWPD-EVIGKQLSSINYQQAMQIRALLIHEQWSAR 67
           LYL RLAP+S+ ++   ++  A  +   D ++      ++       + A L  + ++  
Sbjct: 28  LYLDRLAPSSRLTMTYVLQDAADRLGMADVDIHDIPWHTLQPGHVTALVATLRQDDYAPN 87

Query: 68  SINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAH--QGNPLSAEQVTKLLALL 125
           + +  + AI+ ++  A         Q+  I SI  +  G    +G  +    + +L+   
Sbjct: 88  TTSLYVNAIRGVMNEAWRHDLISHDQLLKIRSIKPVS-GTRLVKGRNIRRTLIRELMEAC 146

Query: 126 SKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPD 185
           +      G R  AI A+  G+G+R+SE   L L+  D A  +++V+ GKGNK  I + P+
Sbjct: 147 AADPRPQGRRDAAIIAILYGSGMRKSESVNLDLSQIDFAERSLRVL-GKGNKQLIKYAPE 205

Query: 186 WVEQHVIAWLNVRKMQLGP-------LICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIG 238
           W  + +  WL +R+  L P       L    R    I   R +++ A+Y + K +   +G
Sbjct: 206 WAFKALNDWLALRRSCLPPGQGDDPFLFNRIRRGSHITRDR-ITKHAIYFIAKQRGRQVG 264

Query: 239 VVGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGD 285
            V   PHD RR+FITR++E+  D++  +++A H  ISTT  YD R D
Sbjct: 265 -VNIMPHDFRRSFITRVIEE-FDLSIAQKLAHHTHISTTASYDMRSD 309