Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Pedobacter sp. GW460-11-11-14-LB5

 Score = 70.1 bits (170), Expect = 6e-17
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 3/179 (1%)

Query: 113 LSAEQVTKLLALLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVA 172
           L+  ++ +L+A +   +   G+R  AI  +  G GLR +EL  L +++       IKV+ 
Sbjct: 114 LNIYEINELIAGIDASKSE-GMRNKAIMEVLYGCGLRVTELTELRISNVFPQIEFIKVI- 171

Query: 173 GKGNKSRILFLPDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKD 232
           GKGNK R++ +     + +  ++N  ++       H     +      +SR +++ L+K 
Sbjct: 172 GKGNKERLVPIGSVALKLLDIYINEVRVHANIKKGHEDFIFLNRFGAKLSRISIFNLIKS 231

Query: 233 KLGDIGVVGA-SPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMRE 290
                G+    SPH LR +F T L+E   D+  V++M GH+ I+TT IY      ++RE
Sbjct: 232 LAISTGLKKTISPHTLRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHIDRDYLRE 290