Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 303 a.a., site-specific tyrosine recombinase XerD from Dyella japonica UNC79MFTsu3.2

 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 10/171 (5%)

Query: 115 AEQVTKLLALLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGK 174
           AE+  + L      + T GLR  A+  L   +GLR SEL  L LA  +     ++V  GK
Sbjct: 119 AEREIESLLQAPDLETTLGLRDRAMLELMYASGLRVSELVELPLASLNLRQGVLRVT-GK 177

Query: 175 GNKSRILFLPDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRP---VSRDALYRLVK 231
           G K R++ + +   + + A+L   +    P++   R    +   +    ++R   + LVK
Sbjct: 178 GGKDRLVPVGELALERIEAYLATAR----PVLAKGRQPAALFLSKRGEGMTRQMFWTLVK 233

Query: 232 DKLGDIGVVGA--SPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
                +G+V    SPH LR +F T LL    D+  ++ + GH+ +STT IY
Sbjct: 234 RYALRVGIVAKRISPHVLRHSFATHLLNHGADLRALQMLLGHSALSTTQIY 284