Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 295 a.a., tyrosine recombinase XerC from Dyella japonica UNC79MFTsu3.2

 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 78/282 (27%), Positives = 128/282 (45%), Gaps = 30/282 (10%)

Query: 10  YLSRLAPN---SQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALLIHEQ--- 63
           +L+RLA     S  ++    R + +L+ W +    +Q+ + +   A ++R  +  E    
Sbjct: 10  WLARLAGERKASPHTVDGYRRDLDKLLRWME---AQQIDAFSRLDAHRMRGFVAAEHRAG 66

Query: 64  WSARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNP--LSAEQVTKL 121
            S +S+ R +++ +S+ +     G  D   VA +          H+  P  L  ++ T L
Sbjct: 67  LSPKSLQRLLSSCRSLFRQLRREGLLDNDPVAGVRGPK-----VHRKLPQVLDVDEATTL 121

Query: 122 LALLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRIL 181
           +   S      G+R  A+  LF  +GLR SEL  L   D D     ++V+ GKG+K+RI+
Sbjct: 122 VE--SGGDGALGVRDRAMLELFYSSGLRLSELVGLRWLDLDLTQGEVRVL-GKGSKTRIV 178

Query: 182 FLPDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHY--RPVS-RDALYRLVKDKLGDIG 238
                V +H +  L      LG        T +       P+S R    RL +  L    
Sbjct: 179 P----VGRHAVEALRA----LGEAEGKAPETPVFRGRGGAPISPRTVQARLKQLALAQGF 230

Query: 239 VVGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
                PH LR TF + +LE + D+  V+++ GHADI+TT IY
Sbjct: 231 AKHVHPHLLRHTFASHMLESSGDLRAVQELLGHADIATTQIY 272