Pairwise Alignments

Query, 400 a.a., ISSod4, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 400 a.a., TRm3 transposase from Sinorhizobium meliloti 1021

 Score =  324 bits (830), Expect = 3e-93
 Identities = 161/394 (40%), Positives = 249/394 (63%), Gaps = 9/394 (2%)

Query: 8   EQALKDLQSGKS---LTGKDSILGPLIKQLTEAALQAELEQHL----AHDPQPNRKNGKT 60
           ++ L  L +G+    + GKD +L  L K L+E  L AEL+ HL          NR+NG +
Sbjct: 5   KELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDDHLDVERLEGGPANRRNGSS 64

Query: 61  PKTIKHPSGNFELDAPRDRNGTFEPQLIKKNQTTLTDEIERKVLSMFSIGMSYRDINQHV 120
            KT+   +    L  PRDR GTF+P+LI + Q    D  + K++SM++ GM+ R+I  H+
Sbjct: 65  KKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFPD-FDDKIISMYARGMTVREIQGHL 123

Query: 121 EDMYGLNVSNATVSAITDKLIPELKAWQQRPLDSHYPIVWLDAIHYKVKEDGRYVSKAVY 180
           E++YG++VS   +SA+TD ++  +  WQ RPL+  YP+V+ DAI  K++++G   +KAVY
Sbjct: 124 EELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVY 183

Query: 181 TLLALNMKGKKEILGLHLSENEGANYWLSVLTDLNNRGVKDILIACVDGLTGFPEAIASI 240
             LA+   G KEILGL + + EGA +WL V+ +L NRG +DILIA VDGL GFPEAI ++
Sbjct: 184 VALAVLADGSKEILGLWIEQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAV 243

Query: 241 FPHTETQLCVIHQIRNSMKYVASKNQKAFMADLKPVYRAVSKEAAEMALDEL-EAKWGDA 299
           FP T  Q C++H IR+S+++V+ K+++  +  L+ +YRA   EA   AL+   E  WG  
Sbjct: 244 FPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEAGLKALEAFEEGYWGQK 303

Query: 300 YPLVINSWRRKWHNLSHYFKYPEHIRKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLK 359
           YP +  SWRR W ++  +F +PE +R++IYTTNA+EA++ + R+  +++G FP + + +K
Sbjct: 304 YPAIAQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMK 363

Query: 360 LLYAGILNASDKWTMPIHNWSLCLSQLAIYFEGR 393
           LLY  + NA+++W      W    +Q A+ F  R
Sbjct: 364 LLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGER 397