Pairwise Alignments

Query, 256 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 270 a.a., permease from Xanthomonas campestris pv. campestris strain 8004

 Score =  305 bits (782), Expect = 5e-88
 Identities = 139/255 (54%), Positives = 197/255 (77%)

Query: 2   KQLYFIAFKSILTKEINRFTRIWVQTLVPPAITMTLYFLIFGNLVGSRIGEMGGVSYMEF 61
           +Q  ++A  +I+ +E+ R  RIW QTLVPPAITMTLYFLIFG L+GSR+G+MGG +YM+F
Sbjct: 16  RQRNWVALGTIVRREVQRILRIWGQTLVPPAITMTLYFLIFGGLIGSRVGDMGGYTYMQF 75

Query: 62  IAPGLIMMSVITNSYSNVASSFYSAKFQRNLEELMVAPVPHYVMIAGYVGGGVARGLCVG 121
           I PGL+MMSVI NSY N++SSF+ AKF R++EEL+V+P+P++V++ GYV G V RG+ VG
Sbjct: 76  IVPGLVMMSVIQNSYGNISSSFFGAKFGRHVEELLVSPMPNWVILWGYVAGAVLRGVMVG 135

Query: 122 LIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLINAVFAKSFDDISIIPTFVLTPL 181
            +V ++AMFF  + + H  + + TV L + +FSL G +NAV+AK FDD++I+PTF+LTPL
Sbjct: 136 ALVLIIAMFFTPVRIPHPLVTLTTVLLGATIFSLAGFVNAVYAKKFDDVAIVPTFILTPL 195

Query: 182 TYLGGVFYSLSLLPAFWQGVSALNPVVYMINVFRYGFLGFADISVPLSIGIMVGFCAALW 241
           TYLGGVFYS+ LLP + +  +  NP+ YM+N FRYG LG +D+ + ++  +M+GF A L 
Sbjct: 196 TYLGGVFYSVKLLPGWAEAATHANPIFYMVNAFRYGLLGSSDVPIWVAYALMLGFVAVLS 255

Query: 242 GVAYYLISRGIGLRS 256
            +A +L+ RG+GLRS
Sbjct: 256 ALALWLLRRGVGLRS 270