Pairwise Alignments

Query, 256 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 253 a.a., ABC-type multidrug transport system, permease component from Xanthomonas campestris pv. campestris strain 8004

 Score =  185 bits (470), Expect = 7e-52
 Identities = 91/249 (36%), Positives = 149/249 (59%)

Query: 8   AFKSILTKEINRFTRIWVQTLVPPAITMTLYFLIFGNLVGSRIGEMGGVSYMEFIAPGLI 67
           A  +I   E+ R  R   Q++  P ++ +LYF++FG  +GSR+G + G+SY  FI PGL+
Sbjct: 5   AIGAIYRFEMARAFRTLTQSIASPVLSTSLYFVVFGAAIGSRMGAIDGISYGAFIIPGLV 64

Query: 68  MMSVITNSYSNVASSFYSAKFQRNLEELMVAPVPHYVMIAGYVGGGVARGLCVGLIVTLV 127
           M+S++  S SN +   Y  ++   + E++ APV  + ++ GYVG    + + +GL++ L 
Sbjct: 65  MLSLLNESISNASFGIYMPRWAGTIYEVLSAPVAWWEIVIGYVGAAATKSVMLGLLILLT 124

Query: 128 AMFFVDISLHHAGLVVMTVFLTSVLFSLGGLINAVFAKSFDDISIIPTFVLTPLTYLGGV 187
           A  FV   + H   ++  + LT++ FSL G I  ++A  F+ + +IP  V+TPLT+LGG 
Sbjct: 125 ARLFVPYEIAHPVWMLGFLVLTALTFSLFGFIIGIWADGFEKLQVIPLMVVTPLTFLGGS 184

Query: 188 FYSLSLLPAFWQGVSALNPVVYMINVFRYGFLGFADISVPLSIGIMVGFCAALWGVAYYL 247
           FYS+++LP  WQ V+  NPVVY+I+ FR+ F G AD+ + +S G+   F     GV   +
Sbjct: 185 FYSINMLPPIWQKVTLFNPVVYLISGFRWSFYGKADVHIAVSTGMTFLFLLVCLGVVAAI 244

Query: 248 ISRGIGLRS 256
              G  L++
Sbjct: 245 FRSGYRLKA 253