Pairwise Alignments

Query, 638 a.a., peptidase, U32 family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 666 a.a., Collagenase and related proteases from Pseudomonas stutzeri RCH2

 Score =  551 bits (1419), Expect = e-161
 Identities = 309/635 (48%), Positives = 402/635 (63%), Gaps = 23/635 (3%)

Query: 12  LSHVNNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCTFAHK 71
           +S   + LELLAPA++A    EAI HGADAVYIGGP+FGAR  A NSV DIA L  FAH 
Sbjct: 1   MSLPKHHLELLAPARDASIAREAILHGADAVYIGGPSFGARHNAENSVADIAELVKFAHL 60

Query: 72  YHAQVFVALNTILMDDELAVAEKLIWDVYNAGADALIVQDMGVLQLNLPPIALHASTQMD 131
           +HA+VFV +NTIL DDEL  A  LI  +Y  G DALIVQDMG+++L++PPI +HASTQ D
Sbjct: 61  FHARVFVTINTILHDDELDAARTLIHQLYEIGVDALIVQDMGIMELDIPPIEIHASTQTD 120

Query: 132 NRNPEKVAFLEQVGFSQVVLARELGLSQIREVAAHTNMQIEFFIHGALCVAYSGLCNLSH 191
            R  E+  FL++ GFSQ+VLAREL L +IR +    +  +EFFIHGALCVA+SG CN+SH
Sbjct: 121 IRTLERAKFLDKAGFSQLVLARELNLQEIRAIYDEVDSTLEFFIHGALCVAFSGQCNISH 180

Query: 192 AFSNRSANRGECSQMCRLPGNLKTRQGDVLAKNEHLLSLKDNNQTDNLEALIDAGVRSFK 251
           A + RSANRG+CSQ CRLP  LK  QG V+A  +HLLS+KDNNQ+ NL AL+DAGVRSFK
Sbjct: 181 AQTGRSANRGDCSQACRLPYTLKDDQGRVVAFEKHLLSMKDNNQSANLSALVDAGVRSFK 240

Query: 252 IEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFVASSHGRTEHTFTPDPEKTFNRGSTDYF 311
           IEGR KD+SYVKN+TA+YRQ+LD I+A RP+   +S GRT+H F PDP+KTF+RGSTDYF
Sbjct: 241 IEGRYKDVSYVKNITAYYRQRLDGILAERPDLARASSGRTDHFFVPDPDKTFHRGSTDYF 300

Query: 312 VHERSQGIKDFRSPKYIGQDVGKVVAIGKDFIQVSSTHEFNNGDGLAYFPPNYAMA---- 367
           V +R   I  F SP + G  VG+V+ +GK  + V +    +NGDGL        +     
Sbjct: 301 VTDRKIDIGAFDSPTFTGLAVGEVLKVGKHDLTVQTREPLSNGDGLNVLIKREVVGFRAS 360

Query: 368 -----KQSDDKLQGLRVNRAEGHKLHVLQVPRDLRVGMTLYRNHNQAFEALLAKESAKRI 422
                KQ ++  Q     R E +++      R +R    L RN +  ++  L K SA+R 
Sbjct: 361 VVEPLKQFEEDGQSFWQYRVEPNEMPTAM--RQVRPNHPLNRNLDHNWQNALLKTSAERR 418

Query: 423 IAVDMRLIDTTAGVALTLTDMYGLSASVELAVEKTPATDAEKTLQTIRTQLSKLGSTDFV 482
           + V          + L +T   G  A+  L      A   E+    I   LS+LG+T + 
Sbjct: 419 VGVRWLAKLRADELELHVTSEEGAYATATLPGPFGEAKKPEQVPGQIADLLSQLGTTIYH 478

Query: 483 ARQISIETAEPWFLPASTLNGLRRDAVAAL----ELARIEGYQRPKPWKYNQDAVYPFKH 538
           A ++ ++  + +F+P S L  LRR+A+ AL    E  R  G ++P         VYP  H
Sbjct: 479 AEEVEVDAPQAFFIPNSQLKALRREAIEALGEAREAIRPRGGRKPVS---VPPPVYPESH 535

Query: 539 LSYLGNVANEKAKDFYQRHGVIEIQDTYEKNGVTEDVPLMVTKHCLRFNFNLCPKEVPGI 598
           LS+L NV NEKA+ FY R+GV  I   YE +  T +VP+M+TKHCLRF+FNLCPK+  G+
Sbjct: 536 LSFLYNVYNEKARAFYHRYGVQLIDAAYEAHEETGEVPVMITKHCLRFSFNLCPKQAKGV 595

Query: 599 -----KADPMVLEIGNDVLKLVFDCPKCEMLVVGE 628
                K  PM L  G++VL L FDC  CEM VVG+
Sbjct: 596 TGVRTKVAPMQLVHGDEVLTLKFDCKPCEMHVVGK 630