Pairwise Alignments

Query, 390 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 395 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  644 bits (1660), Expect = 0.0
 Identities = 321/392 (81%), Positives = 354/392 (90%), Gaps = 2/392 (0%)

Query: 1   MLTTLAISNYRTLREIVLPLGRLNVVTGANGSGKSNLYKALRLLAQTAQGGVVNALALEG 60
           MLTTLAI+NYR+LR+I LPLGRLN+VTGANGSGKSNLYKALRLLAQTAQGGVVNALA EG
Sbjct: 1   MLTTLAINNYRSLRDIRLPLGRLNLVTGANGSGKSNLYKALRLLAQTAQGGVVNALAQEG 60

Query: 61  GLDSCFWAGPENLTKGMLAGDTPIEATVRQAPKRLKLGFAGEDFSYLIELGLPKPDSTTL 120
           GLDSCFWAGPENLTKGML+GDT I  TVRQ  KRLKLGFAG++FSYLIELGLPKPD+TTL
Sbjct: 61  GLDSCFWAGPENLTKGMLSGDTEITPTVRQQTKRLKLGFAGDEFSYLIELGLPKPDNTTL 120

Query: 121 FGLDPQIKREAIWNGAKYRPASVLVERRGPMVKSRSQD-GQ-GWITLSAHLQSSDSIFTE 178
           FGLDPQIKREAIW G KYRPA+VLVERRGPMVK R+Q  GQ GW +L+ H+Q  DSIFTE
Sbjct: 121 FGLDPQIKREAIWVGNKYRPAAVLVERRGPMVKGRAQQRGQDGWQSLNQHMQHGDSIFTE 180

Query: 179 LADPERSPEVLKLRDSIRAWRFYDHFRTDTDAPARRPQLGTATPVLHHDGRDLPSAIQTI 238
           L+DP R+PEVL+LRDSIRAWRFYDHFR+D++APAR+PQLGT TPVLHHDGRDL SAIQTI
Sbjct: 181 LSDPSRTPEVLRLRDSIRAWRFYDHFRSDSEAPARQPQLGTRTPVLHHDGRDLASAIQTI 240

Query: 239 FEIGDKSAFDHAVSDAFPGAKVRITPQAGGILQLEFQQQGLLRPLYASELSDGTLRYLLL 298
           FEIGD+ +FD AVSDAFPGA V I  QAGG+L + F QQGLLRPL A ELSDGTLRYLLL
Sbjct: 241 FEIGDRESFDEAVSDAFPGAHVTIGYQAGGLLSVNFHQQGLLRPLNAQELSDGTLRYLLL 300

Query: 299 IAALLTPRPPELMVLNEPETSLHPDLLPALARLIAKASEVCQLWVVSHANRLINALNQFE 358
           IAALLTPRPPELMVLNEPETSLHPDLLPALARLIAKA++VCQLWVVSHANRLINALN+FE
Sbjct: 301 IAALLTPRPPELMVLNEPETSLHPDLLPALARLIAKATKVCQLWVVSHANRLINALNEFE 360

Query: 359 ECNTLALDKTLGQTQILGQDLLNTPSWLWQNR 390
           +C  + LDK LGQT+I+GQDLL+TP W WQ +
Sbjct: 361 QCQLIELDKQLGQTRIVGQDLLSTPGWNWQQK 392